Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RAM80_RS23870 Genome accession   NZ_CP133165
Coordinates   5170159..5171223 (+) Length   354 a.a.
NCBI ID   WP_416422873.1    Uniprot ID   -
Organism   Pseudomonas sp. App30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5165159..5176223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM80_RS23850 (RAM80_23780) mutS 5165617..5168184 (-) 2568 WP_416422869.1 DNA mismatch repair protein MutS -
  RAM80_RS23855 (RAM80_23785) - 5168338..5169057 (+) 720 WP_416422870.1 LexA family transcriptional regulator -
  RAM80_RS23860 (RAM80_23790) - 5169168..5169506 (+) 339 WP_416422871.1 phage holin family protein -
  RAM80_RS23865 (RAM80_23795) - 5169572..5170072 (+) 501 WP_416422872.1 CinA family protein -
  RAM80_RS23870 (RAM80_23800) recA 5170159..5171223 (+) 1065 WP_416422873.1 recombinase RecA Machinery gene
  RAM80_RS23875 (RAM80_23805) recX 5171231..5171698 (+) 468 WP_416422874.1 recombination regulator RecX -
  RAM80_RS23880 (RAM80_23810) - 5171699..5172829 (-) 1131 WP_416422875.1 LOG family protein -
  RAM80_RS23885 (RAM80_23815) - 5173111..5173305 (+) 195 WP_416422876.1 hypothetical protein -
  RAM80_RS23890 (RAM80_23820) - 5173306..5173734 (-) 429 WP_416422877.1 PA3611 family quorum-sensing-regulated virulence factor -
  RAM80_RS23895 (RAM80_23825) - 5173907..5174620 (+) 714 WP_416422878.1 tRNA-uridine aminocarboxypropyltransferase -
  RAM80_RS23900 (RAM80_23830) - 5174685..5175614 (-) 930 WP_416422879.1 DMT family transporter -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37628.20 Da        Isoelectric Point: 5.0267

>NTDB_id=872267 RAM80_RS23870 WP_416422873.1 5170159..5171223(+) (recA) [Pseudomonas sp. App30]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYLNGEIIDLGVANGLLEKAGAWYSYQGSKIGQGKANSAKFLADNPEIGAALEK
QIRDKLLTGGVDAKKAPVVEADAEDEMVDADVDF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=872267 RAM80_RS23870 WP_416422873.1 5170159..5171223(+) (recA) [Pseudomonas sp. App30]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGACCACGACCGCCAGGCCATCCCGGCTATCTCCACCGGCTCCCTGGGCCTGGACATCGCCCTGGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTCGAGATCTACGGTCCTGAGTCGTCGGGTAAGACCACCCTGACCCTGTCCGTGATCGCC
CAGGCACAGAAGATGGGCGCCACCTGCGCCTTCGTCGACGCCGAGCACGCGCTGGACCCTGAGTACGCCGGCAAGCTGGG
CGTGAACGTCGACGACCTGCTGGTCTCGCAGCCGGACACCGGCGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCCGTTGACGTGATCATCGTCGACTCCGTGGCCGCCCTGGTACCCAAGGCCGAGATCGAAGGCGAGATGGGCGAC
ATGCACGTGGGCCTGCAGGCTCGCCTGATGTCCCAGGCGCTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAGACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAAGTGGTCGGCAGCGAA
ACCCGCGTCAAGATCGTCAAGAACAAGGTGGCTCCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTCTACGGCAAGGGTAT
CTACCTCAACGGCGAGATCATCGACCTGGGCGTGGCCAACGGCCTGCTGGAAAAAGCCGGCGCCTGGTACAGCTACCAGG
GCAGCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGATAACCCGGAAATCGGTGCGGCCCTCGAGAAG
CAGATCCGCGACAAGCTGCTGACCGGCGGTGTCGATGCCAAGAAAGCACCCGTGGTAGAAGCGGATGCCGAAGACGAAAT
GGTAGACGCCGACGTCGATTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

87.5

99.435

0.87
  recA Acinetobacter baylyi ADP1

75

94.915

0.712
  recA Acinetobacter baumannii D1279779

74.398

93.785

0.698
  recA Glaesserella parasuis strain SC1401

69.231

99.153

0.686
  recA Vibrio cholerae strain A1552

73.476

92.655

0.681
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.476

92.655

0.681
  recA Ralstonia pseudosolanacearum GMI1000

69.552

94.633

0.658
  recA Neisseria gonorrhoeae MS11

71.605

91.525

0.655
  recA Neisseria gonorrhoeae MS11

71.605

91.525

0.655
  recA Neisseria gonorrhoeae strain FA1090

71.605

91.525

0.655
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.914

92.373

0.59
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.976

94.35

0.585
  recA Streptococcus mitis SK321

56.461

100

0.568
  recA Streptococcus mitis NCTC 12261

56.18

100

0.565
  recA Helicobacter pylori strain NCTC11637

61.162

92.373

0.565
  recA Streptococcus pneumoniae R6

57.514

97.74

0.562
  recA Streptococcus pneumoniae D39

57.514

97.74

0.562
  recA Streptococcus pneumoniae TIGR4

57.514

97.74

0.562
  recA Streptococcus pneumoniae Rx1

57.514

97.74

0.562
  recA Helicobacter pylori 26695

60.55

92.373

0.559
  recA Streptococcus mutans UA159

60.308

91.808

0.554
  recA Bacillus subtilis subsp. subtilis str. 168

61.059

90.678

0.554
  recA Streptococcus pyogenes NZ131

58.232

92.655

0.54
  recA Latilactobacillus sakei subsp. sakei 23K

56.213

95.48

0.537
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.099

91.525

0.523
  recA Lactococcus lactis subsp. cremoris KW2

55.728

91.243

0.508