Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   RBI10_RS07885 Genome accession   NZ_CP133047
Coordinates   1661910..1662956 (-) Length   348 a.a.
NCBI ID   WP_002115680.1    Uniprot ID   A0A009HJZ5
Organism   Acinetobacter pittii strain A1269     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1656910..1667956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI10_RS07850 (RBI10_07870) ompH 1657155..1657655 (+) 501 WP_002115728.1 OmpH family outer membrane protein -
  RBI10_RS07855 (RBI10_07875) lpxD 1657660..1658730 (+) 1071 WP_002115634.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  RBI10_RS07860 (RBI10_07880) fabZ 1658737..1659222 (+) 486 WP_002115603.1 3-hydroxyacyl-ACP dehydratase FabZ -
  RBI10_RS07865 (RBI10_07885) lpxA 1659219..1660007 (+) 789 WP_005068909.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  RBI10_RS07870 (RBI10_07890) - 1660066..1660941 (-) 876 WP_005068911.1 YbgF trimerization domain-containing protein -
  RBI10_RS07880 (RBI10_07900) recX 1661368..1661850 (-) 483 WP_005068912.1 regulatory protein RecX -
  RBI10_RS07885 (RBI10_07905) recA 1661910..1662956 (-) 1047 WP_002115680.1 recombinase RecA Machinery gene
  RBI10_RS07890 (RBI10_07910) hslR 1663102..1663530 (-) 429 WP_005068915.1 RNA-binding S4 domain-containing protein -
  RBI10_RS07895 (RBI10_07915) yrfG 1663514..1664200 (-) 687 WP_032062771.1 HAD-IA family hydrolase -
  RBI10_RS07900 (RBI10_07920) - 1664624..1664917 (+) 294 WP_023187860.1 hypothetical protein -
  RBI10_RS07905 (RBI10_07925) - 1664955..1665491 (-) 537 WP_005068924.1 GNAT family N-acetyltransferase -
  RBI10_RS07910 (RBI10_07930) gigD 1665520..1665969 (-) 450 WP_004791887.1 Lrp/AsnC family transcriptional regulator GigD -
  RBI10_RS07915 (RBI10_07935) kynU 1666117..1667367 (+) 1251 WP_069119864.1 kynureninase -

Sequence


Protein


Download         Length: 348 a.a.        Molecular weight: 37679.11 Da        Isoelectric Point: 4.9278

>NTDB_id=871451 RBI10_RS07885 WP_002115680.1 1661910..1662956(-) (recA) [Acinetobacter pittii strain A1269]
MDENKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
QCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIIGSE
TRVKVVKNKMAPPFKEAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRHFEENPQMAGEIEK
IIREQLLTTGTNGAVQVEDEEEDLLLES

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=871451 RBI10_RS07885 WP_002115680.1 1661910..1662956(-) (recA) [Acinetobacter pittii strain A1269]
ATGGATGAGAATAAAAGCAAAGCATTACAAGCCGCGCTAAGTCAAATTGAGAAACAATTTGGCAAAAATACGGTGATGCG
TCTCGGTGACAACACTGTTCAAGCAGTTGAAGCTGTATCTACAGGTTCTTTGACGTTAGATATTGCATTGGGGATTGGCG
GTTTACCGAAAGGTCGTATCGTTGAGATTTATGGTCCAGAATCTTCTGGTAAAACCACAATGACTCTCCAAGCGATTGCA
CAATGTCAAAAAGCTGGTGGTACTTGTGCATTTATCGATGCAGAACACGCATTAGATCCACAATATGCACGTAAACTCGG
TGTGGACATTGATAATCTACTTGTATCGCAACCTGATAACGGTGAACAAGCACTTGAGATTGCAGACATGCTAGTTCGCT
CTGGTGCAATTGATTTAATCGTTGTCGACTCAGTGGCTGCTCTTACTCCTAAAGCAGAAATTGAAGGCGAAATGGGTGAC
TCTCACATGGGCTTACAAGCTCGCTTAATGAGTCAGGCATTACGTAAAATTACGGGTAACGCTAAACGCTCGAACTGTAT
GGTTATTTTCATTAACCAGATCCGTATGAAAATTGGTGTAATGTTTGGTAGCCCTGAGACTACGACTGGTGGTAACGCAT
TGAAGTTCTATGCTTCTGTACGTTTAGATATCCGCCGTATTGGTCAGGTCAAAGAAGGTGATGAAATCATCGGCTCTGAA
ACTCGAGTTAAAGTTGTTAAAAACAAAATGGCTCCTCCTTTTAAAGAAGCTATTTTCCAAATCTTATACGGTAAAGGTAC
AAACCAGCTTGGCGAACTTGTAGATTTAGCTGTACAACAAGATATCGTGCAAAAAGCAGGCGCTTGGTATTCATATCAAG
GCAATAAAATTGGCCAAGGTAAAAACAATGTTATCCGCCACTTTGAAGAAAATCCTCAAATGGCTGGAGAAATTGAAAAG
ATTATCCGTGAACAACTGCTAACTACGGGTACTAATGGTGCTGTACAGGTGGAAGATGAAGAAGAAGATCTTCTATTAGA
GTCTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A009HJZ5

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

96.562

100

0.968

  recA Acinetobacter baylyi ADP1

92.837

100

0.931

  recA Pseudomonas stutzeri DSM 10701

75.602

95.402

0.721

  recA Vibrio cholerae strain A1552

74.006

93.966

0.695

  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.006

93.966

0.695

  recA Glaesserella parasuis strain SC1401

71.914

93.103

0.67

  recA Neisseria gonorrhoeae MS11

66.092

100

0.661

  recA Neisseria gonorrhoeae MS11

66.092

100

0.661

  recA Neisseria gonorrhoeae strain FA1090

66.092

100

0.661

  recA Ralstonia pseudosolanacearum GMI1000

69.817

94.253

0.658

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.099

98.563

0.612

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.048

95.115

0.609

  recA Helicobacter pylori strain NCTC11637

63.914

93.966

0.601

  recA Helicobacter pylori 26695

63.609

93.966

0.598

  recA Streptococcus mitis SK321

59.531

97.989

0.583

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.038

91.092

0.583

  recA Streptococcus mitis NCTC 12261

57.183

100

0.583

  recA Streptococcus mutans UA159

61.89

94.253

0.583

  recA Streptococcus pyogenes NZ131

61.538

93.391

0.575

  recA Streptococcus pneumoniae D39

61.043

93.678

0.572

  recA Streptococcus pneumoniae Rx1

61.043

93.678

0.572

  recA Streptococcus pneumoniae R6

61.043

93.678

0.572

  recA Streptococcus pneumoniae TIGR4

61.043

93.678

0.572

  recA Bacillus subtilis subsp. subtilis str. 168

61.491

92.529

0.569

  recA Lactococcus lactis subsp. cremoris KW2

58.824

92.816

0.546

  recA Latilactobacillus sakei subsp. sakei 23K

59.19

92.241

0.546