Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QU603_RS10635 Genome accession   NZ_CP133019
Coordinates   2367150..2368211 (-) Length   353 a.a.
NCBI ID   WP_308491362.1    Uniprot ID   -
Organism   Microbacterium terrisoli strain FW7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2362150..2373211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU603_RS10615 - 2363195..2363755 (-) 561 WP_308491358.1 dihydrofolate reductase family protein -
  QU603_RS10620 miaA 2363874..2364806 (-) 933 WP_308491359.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  QU603_RS10625 miaB 2364803..2366356 (-) 1554 WP_308491360.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  QU603_RS10630 - 2366419..2367147 (-) 729 WP_308491361.1 regulatory protein RecX -
  QU603_RS10635 recA 2367150..2368211 (-) 1062 WP_308491362.1 recombinase RecA Machinery gene
  QU603_RS10640 - 2368472..2368696 (-) 225 WP_308491363.1 DUF3046 domain-containing protein -
  QU603_RS10645 - 2368700..2369008 (-) 309 WP_308491364.1 helix-turn-helix transcriptional regulator -
  QU603_RS10650 - 2369165..2369650 (-) 486 WP_308491365.1 CinA family protein -
  QU603_RS10655 pgsA 2369647..2370213 (-) 567 WP_308491366.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QU603_RS10660 - 2370232..2372925 (-) 2694 WP_308491367.1 DNA translocase FtsK 4TM domain-containing protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37561.95 Da        Isoelectric Point: 5.5094

>NTDB_id=871366 QU603_RS10635 WP_308491362.1 2367150..2368211(-) (recA) [Microbacterium terrisoli strain FW7]
MPSPADREKALESALAQIDRQFGKGSVMRLGSDERAPVEVIPTGSIALDVALGVGGLPRGRIIEIYGPESSGKTTLTLHA
IANVQSAGGIAAFIDAEHALDPDYAKKLGVDIDQLLVSQPDTGEQALEIADMLIRSGAIDLVVIDSVAALVPRAEIEGEM
GDSHVGLQARLMSQALRKLTGGLNQTKTTAIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGSDAVG
NRTRVKVVKNKMAPPFKQAEFDILYGIGISREGSLIDFGVEHAIVKKSGAWYTYDGEQLGQGKENARNFLLKHPDVADDI
ESKIKVKLGIGVPKAVEAVAEGADDAVPQKVSA

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=871366 QU603_RS10635 WP_308491362.1 2367150..2368211(-) (recA) [Microbacterium terrisoli strain FW7]
ATGCCCTCTCCCGCTGACCGCGAGAAAGCCCTCGAATCGGCTCTCGCTCAGATTGACCGGCAATTCGGAAAGGGCTCGGT
GATGCGCCTCGGCAGTGACGAGCGTGCTCCGGTCGAGGTCATCCCCACCGGCTCGATCGCCCTCGACGTCGCCCTCGGCG
TCGGTGGCCTTCCGCGCGGCCGCATCATCGAGATCTACGGCCCGGAGTCCTCGGGCAAGACGACGCTGACGCTGCATGCG
ATCGCGAACGTCCAGAGCGCAGGCGGCATCGCTGCGTTCATCGACGCCGAGCACGCGCTGGACCCCGACTACGCGAAGAA
GCTGGGGGTCGACATCGATCAGCTGCTCGTGTCGCAGCCCGACACAGGTGAGCAGGCGCTCGAGATCGCCGACATGCTGA
TCCGCTCGGGGGCGATCGACCTCGTCGTGATCGACTCGGTGGCCGCCCTCGTGCCGCGTGCCGAGATCGAAGGCGAGATG
GGCGACTCGCACGTCGGTCTGCAGGCACGACTCATGTCGCAGGCGCTGCGCAAGCTCACCGGTGGTCTGAACCAGACCAA
GACGACCGCGATCTTCATCAACCAGCTGCGTGAGAAGATCGGCGTCTTCTTCGGCTCGCCCGAGACCACCGCCGGTGGAA
AGGCGCTGAAGTTCTATGCGTCCGTGCGTCTGGACATCCGTCGCATCGAGACGCTCAAGGACGGATCGGACGCGGTCGGC
AACCGGACCCGCGTCAAGGTCGTCAAGAACAAGATGGCGCCGCCGTTCAAGCAGGCGGAATTCGACATTCTGTACGGCAT
CGGCATCTCGCGTGAGGGCAGCCTCATCGACTTCGGCGTCGAGCACGCGATCGTCAAGAAGTCGGGTGCGTGGTACACGT
ACGACGGCGAGCAGCTCGGGCAGGGCAAAGAGAACGCCCGCAACTTCCTGCTCAAGCACCCGGACGTCGCGGACGACATC
GAGTCGAAGATCAAGGTGAAGCTCGGCATCGGCGTGCCGAAGGCCGTCGAAGCGGTCGCCGAGGGTGCTGACGACGCGGT
GCCGCAGAAGGTCTCTGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

62.784

99.717

0.626
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.784

99.717

0.626
  recA Bacillus subtilis subsp. subtilis str. 168

66.871

92.351

0.618
  recA Ralstonia pseudosolanacearum GMI1000

66.463

92.918

0.618
  recA Neisseria gonorrhoeae MS11

66.258

92.351

0.612
  recA Neisseria gonorrhoeae strain FA1090

66.258

92.351

0.612
  recA Neisseria gonorrhoeae MS11

66.258

92.351

0.612
  recA Acinetobacter baumannii D1279779

66.563

91.501

0.609
  recA Acinetobacter baylyi ADP1

66.254

91.501

0.606
  recA Latilactobacillus sakei subsp. sakei 23K

64.848

93.484

0.606
  recA Pseudomonas stutzeri DSM 10701

65.944

91.501

0.603
  recA Lactococcus lactis subsp. cremoris KW2

64.545

93.484

0.603
  recA Streptococcus pneumoniae R6

63.333

93.484

0.592
  recA Streptococcus pneumoniae TIGR4

63.333

93.484

0.592
  recA Streptococcus pneumoniae Rx1

63.333

93.484

0.592
  recA Streptococcus pneumoniae D39

63.333

93.484

0.592
  recA Streptococcus pyogenes NZ131

63.415

92.918

0.589
  recA Streptococcus mitis SK321

63.03

93.484

0.589
  recA Streptococcus mitis NCTC 12261

63.03

93.484

0.589
  recA Helicobacter pylori 26695

63.03

93.484

0.589
  recA Helicobacter pylori strain NCTC11637

63.03

93.484

0.589
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.497

92.351

0.586
  recA Streptococcus mutans UA159

62.614

93.201

0.584
  recA Glaesserella parasuis strain SC1401

59.942

96.884

0.581
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.702

93.201

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

90.652

0.544