Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RBB60_RS11415 Genome accession   NZ_CP132966
Coordinates   2484506..2485507 (+) Length   333 a.a.
NCBI ID   WP_062676286.1    Uniprot ID   -
Organism   Chryseobacterium cucumeris strain PcE1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2479506..2490507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBB60_RS11400 gap 2480105..2481109 (+) 1005 WP_110008110.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  RBB60_RS11405 - 2481231..2482640 (-) 1410 WP_202841322.1 hypothetical protein -
  RBB60_RS11410 - 2482842..2484032 (+) 1191 WP_238349651.1 oxygenase MpaB family protein -
  RBB60_RS11415 recA 2484506..2485507 (+) 1002 WP_062676286.1 recombinase RecA Machinery gene
  RBB60_RS11420 - 2485776..2487209 (-) 1434 WP_202841323.1 hypothetical protein -
  RBB60_RS11425 - 2487351..2490245 (-) 2895 WP_202841325.1 S9 family peptidase -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35868.24 Da        Isoelectric Point: 5.3432

>NTDB_id=870939 RBB60_RS11415 WP_062676286.1 2484506..2485507(+) (recA) [Chryseobacterium cucumeris strain PcE1]
MSNIDDKKKALALVLDKLDKTYGKGTVMTLGDESIDNTIEVIPSGSLGLDIALGIGGYPKGRIIEIYGPESSGKTTLTLH
AIAEAQKAGGIAAFIDAEHAFDRTYAAKLGIDLENLIISQPDNGEQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGE
MGDSKMGLHARLMSQALRKLTATISRTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRIDIRKASAPIKQGDEA
IGSRVKVKIVKNKVAPPFKQAEFDIMYGEGVSKVGEILDTAVDMGIVKKSGSWFSYEETKLGQGRDAVKDVLRDNPDLAE
ELEAKIKEEMKNK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=870939 RBB60_RS11415 WP_062676286.1 2484506..2485507(+) (recA) [Chryseobacterium cucumeris strain PcE1]
ATGAGTAACATTGATGATAAGAAAAAAGCACTCGCTTTAGTGCTTGACAAGCTAGATAAAACATATGGGAAGGGAACGGT
AATGACTTTAGGTGATGAATCTATAGACAATACCATAGAAGTAATTCCTTCCGGTTCTTTAGGTTTGGATATTGCCCTAG
GTATAGGCGGATATCCAAAAGGAAGAATCATTGAAATATATGGTCCTGAATCTTCAGGTAAAACAACGTTGACCCTTCAC
GCTATTGCTGAGGCTCAAAAAGCAGGTGGTATTGCAGCATTCATTGATGCAGAGCACGCTTTCGACAGAACGTATGCTGC
GAAATTAGGAATTGATCTTGAAAACCTGATCATTTCTCAGCCGGACAACGGTGAGCAGGCTTTAGAAATTGCAGATAATT
TGATCCGTTCAGGAGCTATTGATATCGTTGTTATTGACTCTGTGGCAGCTCTTACTCCAAAAGCAGAAATCGAAGGTGAA
ATGGGAGATTCCAAAATGGGTCTTCATGCAAGATTAATGTCTCAGGCATTAAGAAAGCTTACCGCTACGATTTCAAGAAC
AAAATGTACCGTGATTTTCATCAACCAGTTGAGAGAAAAGATCGGTGTCATGTTCGGGAACCCTGAAACCACTACCGGAG
GTAATGCACTGAAGTTTTACGCTTCTGTAAGAATTGATATCAGAAAAGCAAGTGCTCCTATCAAACAAGGTGATGAAGCA
ATCGGTAGCCGTGTGAAAGTGAAGATTGTGAAAAACAAAGTAGCACCTCCATTCAAGCAGGCAGAATTCGACATCATGTA
TGGTGAAGGTGTTTCTAAAGTAGGAGAAATTCTTGATACCGCTGTAGATATGGGAATTGTGAAGAAAAGCGGATCATGGT
TCAGCTACGAAGAGACTAAATTGGGTCAGGGACGTGATGCTGTAAAAGATGTTTTAAGAGATAATCCGGATCTTGCTGAA
GAATTGGAAGCTAAGATTAAGGAAGAAATGAAAAACAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

80.18

100

0.802
  recA Acinetobacter baylyi ADP1

64.742

98.799

0.64
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

98.198

0.634
  recA Acinetobacter baumannii D1279779

64.417

97.898

0.631
  recA Glaesserella parasuis strain SC1401

63.914

98.198

0.628
  recA Helicobacter pylori strain NCTC11637

63.303

98.198

0.622
  recA Helicobacter pylori 26695

63.303

98.198

0.622
  recA Bacillus subtilis subsp. subtilis str. 168

62.883

97.898

0.616
  recA Ralstonia pseudosolanacearum GMI1000

64.856

93.994

0.61
  recA Neisseria gonorrhoeae strain FA1090

62.229

96.997

0.604
  recA Neisseria gonorrhoeae MS11

62.229

96.997

0.604
  recA Neisseria gonorrhoeae MS11

62.229

96.997

0.604
  recA Streptococcus pyogenes NZ131

61.162

98.198

0.601
  recA Streptococcus mitis NCTC 12261

61.043

97.898

0.598
  recA Pseudomonas stutzeri DSM 10701

61.043

97.898

0.598
  recA Streptococcus mitis SK321

61.043

97.898

0.598
  recA Lactococcus lactis subsp. cremoris KW2

60.123

97.898

0.589
  recA Streptococcus mutans UA159

59.939

98.198

0.589
  recA Vibrio cholerae strain A1552

59.271

98.799

0.586
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.271

98.799

0.586
  recA Streptococcus pneumoniae TIGR4

59.692

97.598

0.583
  recA Streptococcus pneumoniae Rx1

59.692

97.598

0.583
  recA Streptococcus pneumoniae D39

59.692

97.598

0.583
  recA Streptococcus pneumoniae R6

59.692

97.598

0.583
  recA Latilactobacillus sakei subsp. sakei 23K

59.133

96.997

0.574
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.442

97.898

0.553