Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RBB56_RS01065 Genome accession   NZ_CP132957
Coordinates   213116..214174 (-) Length   352 a.a.
NCBI ID   WP_306720535.1    Uniprot ID   -
Organism   Kineothrix sp. MB12-C1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 208116..219174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBB56_RS01045 (RBB56_01045) - 208766..209302 (-) 537 WP_306720531.1 NUDIX hydrolase -
  RBB56_RS01050 (RBB56_01050) - 209313..210605 (-) 1293 WP_306720532.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  RBB56_RS01055 (RBB56_01055) rny 210833..212377 (-) 1545 WP_306720533.1 ribonuclease Y -
  RBB56_RS01060 (RBB56_01060) - 212486..213109 (-) 624 WP_306720534.1 regulatory protein RecX -
  RBB56_RS01065 (RBB56_01065) recA 213116..214174 (-) 1059 WP_306720535.1 recombinase RecA Machinery gene
  RBB56_RS01070 (RBB56_01070) istB 214496..215272 (-) 777 WP_306718873.1 IS21-like element helper ATPase IstB -
  RBB56_RS01075 (RBB56_01075) istA 215279..216829 (-) 1551 WP_306718874.1 IS21 family transposase -
  RBB56_RS01085 (RBB56_01085) - 217265..218341 (-) 1077 WP_306720536.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38069.68 Da        Isoelectric Point: 6.1807

>NTDB_id=870869 RBB56_RS01065 WP_306720535.1 213116..214174(-) (recA) [Kineothrix sp. MB12-C1]
MEKEEKLKALDAALVQIEKQYGKGAVMKLGDPSVQMNVETIPTGALSLDIALGLGGIPRGRVVEIYGPESSGKTTVTLHM
VAEVQKRGGIAGFIDAEHALDPAYAKKIGVDVDNLYISQPDNGEQALEITETMVRSGAIDIVVVDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGIISKSNCTVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRRIESLKQSGEIVG
NRTRVKIVKNKVAPPFKEAEFDIMFGEGISTVGDILDLAAEINIINKSGAWYAYDGTKIGQGRENAKQYLKDNPEIAATV
EQKVREHYGLVKEVPVTGSEETATEKKKKKAE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=870869 RBB56_RS01065 WP_306720535.1 213116..214174(-) (recA) [Kineothrix sp. MB12-C1]
ATGGAAAAAGAAGAAAAGTTAAAAGCCTTGGATGCCGCCCTTGTGCAGATAGAGAAGCAGTACGGCAAGGGTGCGGTAAT
GAAGCTGGGAGATCCCAGCGTGCAGATGAACGTTGAGACGATTCCAACAGGGGCCCTTAGCCTCGATATCGCTCTTGGAT
TGGGGGGAATTCCCAGAGGACGAGTAGTAGAGATATACGGACCGGAATCGAGCGGTAAGACGACAGTTACATTACATATG
GTAGCAGAAGTGCAAAAAAGAGGCGGAATTGCAGGCTTTATCGATGCAGAACATGCATTGGATCCTGCCTATGCGAAAAA
GATTGGCGTGGATGTGGATAATCTATATATTTCGCAGCCGGATAACGGTGAACAGGCGCTGGAGATCACAGAGACTATGG
TTCGCTCCGGAGCCATCGATATTGTTGTTGTGGACTCCGTAGCAGCTCTCGTTCCCAAGGCTGAGATAGATGGAGATATG
GGAGATAGCCATGTAGGCCTTCAGGCTCGTTTGATGTCTCAGGCACTTAGAAAGCTGACAGGAATTATCAGTAAATCTAA
TTGTACCGTTATATTTATCAACCAGCTTCGTGAGAAGGTAGGTGTTATGTTCGGTAATCCGGAGACTACTACCGGCGGCC
GTGCGTTGAAATTCTATTCCTCCGTCCGTCTCGATGTAAGGAGAATTGAATCGTTGAAGCAAAGTGGGGAAATCGTAGGT
AACAGAACGAGAGTGAAAATCGTTAAAAATAAAGTGGCTCCTCCTTTTAAAGAGGCAGAATTCGATATTATGTTCGGCGA
GGGAATCTCTACCGTAGGTGATATTCTTGATTTGGCAGCGGAGATAAATATCATTAATAAAAGCGGAGCTTGGTATGCAT
ATGATGGTACGAAGATAGGGCAAGGCAGGGAGAATGCGAAACAGTATTTAAAGGATAATCCGGAGATTGCTGCGACGGTG
GAACAGAAAGTGCGAGAGCACTATGGACTGGTAAAGGAAGTTCCTGTAACAGGAAGTGAAGAGACAGCCACAGAGAAGAA
AAAGAAAAAAGCTGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

68.944

91.477

0.631
  recA Streptococcus mutans UA159

62.606

100

0.628
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.768

93.182

0.622
  recA Neisseria gonorrhoeae MS11

63.848

97.443

0.622
  recA Neisseria gonorrhoeae MS11

63.848

97.443

0.622
  recA Neisseria gonorrhoeae strain FA1090

63.848

97.443

0.622
  recA Streptococcus mitis SK321

61.648

100

0.616
  recA Streptococcus mitis NCTC 12261

61.648

100

0.616
  recA Streptococcus pneumoniae R6

61.19

100

0.614
  recA Streptococcus pneumoniae Rx1

61.19

100

0.614
  recA Streptococcus pneumoniae D39

61.19

100

0.614
  recA Streptococcus pneumoniae TIGR4

61.19

100

0.614
  recA Latilactobacillus sakei subsp. sakei 23K

63.881

95.17

0.608
  recA Acinetobacter baumannii D1279779

65.741

92.045

0.605
  recA Glaesserella parasuis strain SC1401

65.538

92.33

0.605
  recA Ralstonia pseudosolanacearum GMI1000

65.231

92.33

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.628

97.727

0.602
  recA Acinetobacter baylyi ADP1

65.432

92.045

0.602
  recA Lactococcus lactis subsp. cremoris KW2

62.5

95.455

0.597
  recA Pseudomonas stutzeri DSM 10701

65.217

91.477

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.015

91.761

0.597
  recA Vibrio cholerae strain A1552

65.015

91.761

0.597
  recA Helicobacter pylori 26695

62.952

94.318

0.594
  recA Helicobacter pylori strain NCTC11637

62.651

94.318

0.591
  recA Streptococcus pyogenes NZ131

63.03

93.75

0.591
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.939

92.898

0.557