Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   Q5701_RS09855 Genome accession   NZ_CP132956
Coordinates   1967949..1969019 (-) Length   356 a.a.
NCBI ID   WP_306755054.1    Uniprot ID   -
Organism   Paracoccus sp. M09     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1962949..1974019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5701_RS09835 - 1963518..1963958 (+) 441 WP_234853754.1 DUF4177 domain-containing protein -
  Q5701_RS09840 - 1963963..1964757 (-) 795 WP_306755051.1 class II glutamine amidotransferase -
  Q5701_RS09845 - 1964818..1965117 (-) 300 WP_306755052.1 DUF1330 domain-containing protein -
  Q5701_RS09850 alaS 1965114..1967771 (-) 2658 WP_306755053.1 alanine--tRNA ligase -
  Q5701_RS09855 recA 1967949..1969019 (-) 1071 WP_306755054.1 recombinase RecA Machinery gene
  Q5701_RS09860 - 1969188..1971272 (-) 2085 WP_306755055.1 ATP-binding protein -
  Q5701_RS09865 - 1971353..1972495 (-) 1143 WP_306755056.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  Q5701_RS09870 - 1972492..1973661 (-) 1170 WP_306755057.1 nucleotide sugar dehydrogenase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38292.68 Da        Isoelectric Point: 5.0722

>NTDB_id=870865 Q5701_RS09855 WP_306755054.1 1967949..1969019(-) (recA) [Paracoccus sp. M09]
MAQASIFDMNDKRSADKQKALDSALAQIERQFGKGSIMKLGKDNPVAEIEATSTGSLGLDIALGIGGLPKGRIIEIFGPE
SSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPLYARKLGVNLDDLLISQPDTGEQALEIVDTLVRSGAVSLVVVDSVAA
LTPKSEIEGDMGDMQMGSQARLMSQAMRKLTASIGRSNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRT
GAVKDRDEVIGNATRVKVVKNKVAPPFRQVEFDIMYGEGISKVGELIDLGVKAGVVEKSGAWYSYGDERIGQGRENAKQF
LRDNPEKATAIEDKIRASHGLEFAVAGNEDDSLTEE

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=870865 Q5701_RS09855 WP_306755054.1 1967949..1969019(-) (recA) [Paracoccus sp. M09]
ATGGCACAGGCGAGCATTTTCGACATGAACGACAAGCGCAGCGCGGACAAGCAGAAGGCGCTCGACAGCGCCCTGGCCCA
GATCGAACGGCAGTTCGGCAAGGGCTCGATCATGAAGCTGGGCAAGGACAACCCGGTGGCCGAGATCGAGGCGACCTCGA
CAGGCTCACTGGGGCTGGACATCGCGCTTGGCATCGGCGGTCTGCCCAAGGGTCGCATCATCGAAATATTTGGCCCGGAA
AGCTCGGGCAAGACCACGCTGACGCTCCATGTCGTGGCCGAGGAACAGAAGAAGGGCGGCGTCTGTGCCTTTGTTGACGC
GGAACACGCGCTTGACCCGCTGTATGCCCGCAAGCTGGGCGTGAACCTGGATGATCTGCTGATCAGCCAGCCCGATACCG
GCGAACAGGCGTTGGAGATCGTGGATACGCTGGTGCGGTCCGGTGCGGTCAGCCTGGTGGTGGTCGATTCGGTCGCGGCG
CTGACGCCCAAGTCCGAAATCGAGGGCGACATGGGCGATATGCAGATGGGCAGCCAGGCCCGCCTGATGAGCCAGGCGAT
GCGCAAGCTGACCGCCAGCATCGGCCGGTCGAACTGCATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGCAACCCGGAAACCACGACCGGCGGCAATGCGCTGAAGTTCTATGCCTCGGTTCGCCTCGACATCCGCCGCACC
GGCGCCGTCAAGGACCGGGACGAGGTGATCGGCAACGCGACCCGCGTCAAGGTCGTCAAGAACAAGGTCGCGCCGCCCTT
CCGGCAGGTGGAATTCGACATCATGTATGGCGAAGGCATCAGCAAGGTTGGGGAACTGATCGACCTGGGCGTCAAGGCCG
GCGTGGTCGAGAAGTCGGGCGCCTGGTATTCCTATGGCGACGAACGCATCGGCCAGGGCCGCGAGAACGCCAAGCAGTTC
CTGCGCGACAACCCTGAAAAGGCCACCGCGATCGAGGACAAGATCCGCGCCAGCCACGGCCTTGAATTCGCCGTCGCAGG
CAACGAAGACGACAGCCTGACCGAGGAGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

73.476

92.135

0.677
  recA Neisseria gonorrhoeae MS11

68.529

95.506

0.654
  recA Neisseria gonorrhoeae MS11

68.529

95.506

0.654
  recA Neisseria gonorrhoeae strain FA1090

68.529

95.506

0.654
  recA Glaesserella parasuis strain SC1401

72.188

89.888

0.649
  recA Pseudomonas stutzeri DSM 10701

71.739

90.449

0.649
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.028

90.169

0.64
  recA Vibrio cholerae strain A1552

71.028

90.169

0.64
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.359

94.663

0.638
  recA Acinetobacter baylyi ADP1

70.093

90.169

0.632
  recA Acinetobacter baumannii D1279779

69.159

90.169

0.624
  recA Helicobacter pylori strain NCTC11637

64.516

95.787

0.618
  recA Helicobacter pylori 26695

63.93

95.787

0.612
  recA Bacillus subtilis subsp. subtilis str. 168

66.463

92.135

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.636

95.787

0.61
  recA Streptococcus pyogenes NZ131

58.857

98.315

0.579
  recA Streptococcus mitis SK321

60.651

94.944

0.576
  recA Streptococcus mitis NCTC 12261

60.651

94.944

0.576
  recA Streptococcus pneumoniae Rx1

60.355

94.944

0.573
  recA Streptococcus pneumoniae D39

60.355

94.944

0.573
  recA Streptococcus pneumoniae R6

60.355

94.944

0.573
  recA Streptococcus pneumoniae TIGR4

60.355

94.944

0.573
  recA Streptococcus mutans UA159

60.606

92.697

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

60.736

91.573

0.556
  recA Lactococcus lactis subsp. cremoris KW2

58.284

94.944

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.951

91.011

0.537