Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RAH45_RS10915 Genome accession   NZ_CP132595
Coordinates   2568890..2569948 (+) Length   352 a.a.
NCBI ID   WP_068403815.1    Uniprot ID   A0A2I0ELZ7
Organism   Psychrobacter sp. van23A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2563890..2574948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAH45_RS10905 (RAH45_10910) - 2565663..2566592 (-) 930 WP_068403817.1 DUF2628 domain-containing protein -
  RAH45_RS10910 (RAH45_10915) trmB 2566982..2567797 (+) 816 WP_068403853.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  RAH45_RS10915 (RAH45_10920) recA 2568890..2569948 (+) 1059 WP_068403815.1 recombinase RecA Machinery gene
  RAH45_RS10920 (RAH45_10925) - 2569989..2571077 (+) 1089 WP_068403814.1 regulatory protein RecX -
  RAH45_RS10925 (RAH45_10930) - 2571127..2572584 (-) 1458 WP_068403812.1 anion permease -
  RAH45_RS10930 (RAH45_10935) - 2572911..2573639 (-) 729 WP_068403810.1 YidB family protein -
  RAH45_RS10935 (RAH45_10940) - 2574023..2574394 (-) 372 WP_227678281.1 hypothetical protein -
  RAH45_RS10940 (RAH45_10945) - 2574477..2574770 (-) 294 WP_068403808.1 succinate dehydrogenase assembly factor 2 -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37745.10 Da        Isoelectric Point: 4.8028

>NTDB_id=869537 RAH45_RS10915 WP_068403815.1 2568890..2569948(+) (recA) [Psychrobacter sp. van23A]
MDENKAKALKAALGQIEKQFGKNTIMHLGDDSATLDADVVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAI
AECQKQGGVCAFIDAEHALDPVYARKLGVNTDDLLVSQPDNGEQALEITDMLVRSGAVDMIVIDSVAALTPRAEIEGEMG
DSHMGLQARLMSQALRKITGNAKRSNCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRIGAVKNGDDIIGN
QTRVKVIKNKMAPPFRQAEFEITYGEGTNHLAEVIDLGVEIGAVGKAGSWYSYGDEKIGQGKANSVLFLKENPAIAEEIE
AKIRAEKLGVVDPNKAPDKEEPEQDFAPEPVQ

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=869537 RAH45_RS10915 WP_068403815.1 2568890..2569948(+) (recA) [Psychrobacter sp. van23A]
ATGGACGAAAATAAAGCCAAAGCCCTCAAAGCGGCATTAGGTCAAATTGAAAAGCAATTTGGTAAAAACACCATTATGCA
TCTTGGTGACGACTCAGCCACGCTTGACGCCGATGTGGTCTCTACCGGCTCATTGGGTCTAGATATCGCGCTTGGTATTG
GCGGTCTACCAAAAGGTCGTATCGTTGAGATTTACGGTCCTGAAAGCTCTGGTAAAACCACCATGACCTTGCAAGCGATT
GCCGAATGTCAAAAGCAAGGCGGCGTTTGTGCCTTTATCGATGCCGAGCACGCTCTTGACCCAGTTTACGCCCGTAAACT
TGGGGTAAATACCGACGATTTACTCGTGTCACAGCCAGACAATGGCGAGCAAGCGCTTGAGATTACCGATATGTTAGTGC
GCTCAGGGGCAGTTGATATGATTGTCATCGACTCCGTCGCGGCGCTAACCCCGCGAGCAGAAATCGAGGGTGAAATGGGC
GATTCGCACATGGGTCTGCAGGCACGTTTGATGAGCCAAGCGCTGCGTAAAATCACCGGTAATGCCAAACGCTCGAACTG
TATGGTGGTCTTTATCAACCAGATTCGTATGAAAATCGGCGTTATGTTTGGTAGCCCTGAAACCACAACCGGTGGTAATG
CACTAAAATTCTATGCGTCCGTACGTATGGATATCCGCCGTATCGGGGCGGTAAAAAATGGCGATGATATCATCGGTAAC
CAAACCCGCGTCAAAGTTATCAAAAATAAGATGGCGCCGCCATTCCGTCAAGCTGAATTTGAAATCACTTACGGTGAAGG
TACCAACCATCTAGCAGAAGTGATTGATTTGGGCGTTGAGATTGGCGCAGTTGGTAAAGCAGGCTCGTGGTATAGCTATG
GCGATGAAAAAATCGGCCAAGGTAAAGCCAATTCGGTACTGTTTTTAAAAGAAAACCCTGCAATTGCTGAAGAGATCGAA
GCGAAAATTCGGGCTGAAAAACTTGGCGTAGTCGACCCTAATAAAGCTCCAGACAAGGAAGAGCCTGAACAAGACTTTGC
TCCTGAGCCTGTGCAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I0ELZ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

75.793

98.58

0.747
  recA Acinetobacter baumannii D1279779

76.012

98.295

0.747
  recA Pseudomonas stutzeri DSM 10701

73.86

93.466

0.69
  recA Vibrio cholerae strain A1552

71.914

92.045

0.662
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.914

92.045

0.662
  recA Glaesserella parasuis strain SC1401

72.05

91.477

0.659
  recA Ralstonia pseudosolanacearum GMI1000

69.394

93.75

0.651
  recA Neisseria gonorrhoeae strain FA1090

69.538

92.33

0.642
  recA Neisseria gonorrhoeae MS11

69.538

92.33

0.642
  recA Neisseria gonorrhoeae MS11

69.538

92.33

0.642
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.462

92.33

0.614
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.651

94.318

0.591
  recA Helicobacter pylori strain NCTC11637

64

92.33

0.591
  recA Helicobacter pylori 26695

63.692

92.33

0.588
  recA Bacillus subtilis subsp. subtilis str. 168

63.863

91.193

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.802

92.045

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

60.802

92.045

0.56
  recA Streptococcus pneumoniae D39

55.241

100

0.554
  recA Streptococcus pneumoniae R6

55.241

100

0.554
  recA Streptococcus pneumoniae Rx1

55.241

100

0.554
  recA Streptococcus pneumoniae TIGR4

55.241

100

0.554
  recA Streptococcus mutans UA159

55.62

98.58

0.548
  recA Streptococcus mitis SK321

55.685

97.443

0.543
  recA Lactococcus lactis subsp. cremoris KW2

58.462

92.33

0.54
  recA Streptococcus mitis NCTC 12261

57.229

94.318

0.54
  recA Streptococcus pyogenes NZ131

56.748

92.614

0.526