Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RA085_RS07665 Genome accession   NZ_CP132559
Coordinates   1553683..1554732 (-) Length   349 a.a.
NCBI ID   WP_041080466.1    Uniprot ID   A0A380HNM2
Organism   Staphylococcus saprophyticus strain SZ.YL11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1548683..1559732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA085_RS07650 (RA085_07655) - 1550300..1551088 (-) 789 WP_002483433.1 TIGR00282 family metallophosphoesterase -
  RA085_RS07655 (RA085_07660) - 1551251..1551466 (+) 216 WP_002483434.1 hypothetical protein -
  RA085_RS07660 (RA085_07665) rny 1551748..1553307 (-) 1560 WP_037538515.1 ribonuclease Y -
  RA085_RS07665 (RA085_07670) recA 1553683..1554732 (-) 1050 WP_041080466.1 recombinase RecA Machinery gene
  RA085_RS07670 (RA085_07675) - 1554908..1556050 (-) 1143 WP_041080464.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  RA085_RS07675 (RA085_07680) pgsA 1556280..1556861 (-) 582 WP_037538519.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RA085_RS07680 (RA085_07685) - 1556912..1557304 (-) 393 WP_002483439.1 RodZ family helix-turn-helix domain-containing protein -
  RA085_RS07685 (RA085_07690) - 1557337..1558167 (-) 831 WP_002483440.1 DUF3388 domain-containing protein -
  RA085_RS07690 (RA085_07695) ymfI 1558509..1559213 (-) 705 WP_041080463.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37856.97 Da        Isoelectric Point: 5.3763

>NTDB_id=869489 RA085_RS07665 WP_041080466.1 1553683..1554732(-) (recA) [Staphylococcus saprophyticus strain SZ.YL11]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNKARKVSSVSSGSVTLDNALGVGGYPKGRIVEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAEALGVDIQNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAVFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGKGISKEGELIDLGAEHEIVNKSGAWYSYNGERMGQGKENVKLYLKENPAIREEIDQ
KLREKLGIFDGDVEEKEAESPAKLFDEEE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=869489 RA085_RS07665 WP_041080466.1 1553683..1554732(-) (recA) [Staphylococcus saprophyticus strain SZ.YL11]
TTGGATAACGATCGTCAAAAAGCTTTAGATACGGTAATTAAAAATATGGAGAAATCATTTGGTAAAGGTGCTGTTATGAA
ATTAGGCGACAACAAAGCGCGCAAAGTTTCGAGTGTATCAAGTGGTTCTGTAACATTAGATAATGCTTTAGGTGTAGGTG
GTTACCCTAAAGGAAGAATCGTAGAAATTTATGGTCCAGAAAGTTCTGGTAAAACAACTGTAGCGTTACATGCTATCGCT
GAAGTACAAAAAAATGGCGGTGTTGCAGCGTTCATAGATGCTGAGCATGCATTAGATCCTGTTTACGCAGAAGCTTTAGG
CGTAGACATACAAAATTTATATTTATCTCAACCTGATCATGGGGAACAAGGTTTAGAAATTGCCGAAGCATTTGTTAGAA
GTGGCGCTGTTGATATCGTTGTGGTCGATTCAGTTGCTGCGCTTACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACGCACGTTGGTTTGCAAGCACGTCTTATGTCCCAAGCTTTGAGAAAGCTTTCCGGTGCAATTTCAAAATCAAATACAAC
AGCAGTATTTATCAACCAAATCCGTGAAAAAGTTGGTGTGATGTTCGGTAATCCTGAAGTTACACCAGGTGGACGTGCTT
TGAAATTCTATAGCTCTGTTCGTTTAGAAGTGCGCCGTGCGGAACAATTGAAACAAGGTCAAGAAATTGTTGGTAATAGA
ACAAAAATTAAAGTCGTTAAGAATAAAGTAGCACCACCATTTAGAGTTGCAGAAGTTGATATTATGTATGGTAAAGGTAT
CTCTAAAGAAGGAGAATTAATTGACCTAGGTGCTGAACATGAAATTGTAAATAAATCAGGGGCTTGGTATTCATACAATG
GTGAACGTATGGGACAAGGTAAAGAAAATGTGAAATTATACCTCAAAGAAAACCCTGCTATTCGAGAAGAAATTGATCAA
AAATTACGGGAAAAATTAGGTATCTTTGACGGTGACGTTGAAGAAAAAGAAGCTGAAAGTCCTGCTAAACTTTTTGATGA
GGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380HNM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.074

93.41

0.711
  recA Latilactobacillus sakei subsp. sakei 23K

71.341

93.983

0.67
  recA Streptococcus mutans UA159

64.571

100

0.648
  recA Neisseria gonorrhoeae MS11

64.162

99.14

0.636
  recA Neisseria gonorrhoeae MS11

64.162

99.14

0.636
  recA Neisseria gonorrhoeae strain FA1090

64.162

99.14

0.636
  recA Streptococcus pneumoniae R6

64.912

97.994

0.636
  recA Streptococcus pneumoniae Rx1

64.912

97.994

0.636
  recA Streptococcus pneumoniae D39

64.912

97.994

0.636
  recA Streptococcus pneumoniae TIGR4

64.912

97.994

0.636
  recA Streptococcus pyogenes NZ131

67.173

94.269

0.633
  recA Streptococcus mitis SK321

64.809

97.708

0.633
  recA Streptococcus mitis NCTC 12261

65.465

95.415

0.625
  recA Lactococcus lactis subsp. cremoris KW2

65.559

94.842

0.622
  recA Acinetobacter baumannii D1279779

62.356

99.713

0.622
  recA Acinetobacter baylyi ADP1

65.951

93.41

0.616
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.134

94.269

0.605
  recA Vibrio cholerae strain A1552

64.724

93.41

0.605
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.724

93.41

0.605
  recA Helicobacter pylori 26695

64.329

93.983

0.605
  recA Helicobacter pylori strain NCTC11637

64.024

93.983

0.602
  recA Ralstonia pseudosolanacearum GMI1000

65.495

89.685

0.587
  recA Glaesserella parasuis strain SC1401

58.571

100

0.587
  recA Pseudomonas stutzeri DSM 10701

62.27

93.41

0.582
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

94.842

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.312

91.691

0.553