Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RAL98_RS08125 Genome accession   NZ_CP132544
Coordinates   1614089..1615135 (+) Length   348 a.a.
NCBI ID   WP_251516594.1    Uniprot ID   -
Organism   Staphylococcus sp. HKU1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1609089..1620135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAL98_RS08100 (RAL98_08070) ymfI 1609738..1610442 (+) 705 WP_251516578.1 elongation factor P 5-aminopentanone reductase -
  RAL98_RS08105 (RAL98_08075) - 1610597..1611439 (+) 843 WP_251516582.1 YmfK family protein -
  RAL98_RS08110 (RAL98_08080) - 1611473..1611865 (+) 393 WP_251516584.1 helix-turn-helix domain-containing protein -
  RAL98_RS08115 (RAL98_08085) pgsA 1611891..1612475 (+) 585 WP_251516586.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RAL98_RS08120 (RAL98_08090) - 1612775..1613917 (+) 1143 WP_251516592.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  RAL98_RS08125 (RAL98_08095) recA 1614089..1615135 (+) 1047 WP_251516594.1 recombinase RecA Machinery gene
  RAL98_RS08130 (RAL98_08100) rny 1615417..1616976 (+) 1560 WP_251516596.1 ribonuclease Y -
  RAL98_RS08135 (RAL98_08105) - 1617190..1617405 (-) 216 WP_251516598.1 hypothetical protein -
  RAL98_RS08140 (RAL98_08110) - 1617570..1618361 (+) 792 WP_251516600.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37728.62 Da        Isoelectric Point: 4.9181

>NTDB_id=869384 RAL98_RS08125 WP_251516594.1 1614089..1615135(+) (recA) [Staphylococcus sp. HKU1]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSVSSGSVTLDNALGVGGYPKGRIVEIYGPESSGKTTVALHAIA
EVQKNGGIAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSAAISKSNTTAIFINQVREKVGVMFGNPEVTPGGRALKFYSSIRIEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGKGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKTYLKENPEVKNDIDQ
KLREKLGIFDGDVEESEEESTPETLFDE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=869384 RAL98_RS08125 WP_251516594.1 1614089..1615135(+) (recA) [Staphylococcus sp. HKU1]
TTGGATAACGATCGTCAAAAAGCATTAGATACAGTTATAAAGAATATGGAGAAATCATTTGGTAAAGGTGCAGTAATGAA
ACTCGGTGATAATAAAGGTCGCAGAGTTTCAAGTGTATCAAGTGGGTCAGTAACATTAGATAACGCATTAGGCGTAGGTG
GTTACCCTAAAGGCCGTATAGTTGAGATTTATGGTCCAGAAAGTTCTGGTAAGACGACAGTTGCCTTACACGCTATCGCT
GAAGTTCAGAAAAATGGTGGTATCGCAGCATTTATCGACGCTGAGCATGCATTAGACCCTGTATACGCTCAAGCCTTAGG
TGTCGACATTGATAATCTTTACTTATCACAACCAGATCACGGAGAGCAAGGTTTAGAAATCGCAGAAGCGTTCGTTCGAA
GTGGCGCTGTTGATATTGTAGTAGTTGACTCTGTTGCAGCATTAACACCAAAGGCTGAAATTGAAGGTGAAATGGGCGAT
ACGCACGTAGGTTTACAAGCGAGATTAATGTCACAAGCACTACGTAAGTTATCTGCAGCTATTTCTAAATCTAATACTAC
AGCAATCTTTATCAACCAAGTACGTGAAAAAGTCGGCGTTATGTTCGGTAACCCTGAAGTAACACCTGGTGGTCGTGCAT
TGAAATTCTATAGTTCTATTCGTATTGAAGTTCGCCGTGCTGAACAATTGAAACAAGGTCAAGATATTGTTGGTAATAGA
ACTAAGATTAAAGTAGTTAAAAACAAAGTTGCTCCACCATTCAGAGTAGCAGAAGTTGATATTATGTATGGTAAAGGTAT
TTCTAAAGAAGGAGAGCTTATCGATTTAGGTGTAGAAAACGATATTGTTGATAAATCAGGTGCATGGTATTCATATAATG
GTGACCGTATGGGTCAAGGTAAGGAAAATGTTAAAACTTACTTGAAAGAAAATCCAGAAGTGAAAAACGACATCGATCAG
AAATTACGCGAGAAATTGGGTATTTTTGATGGAGATGTAGAAGAGTCAGAAGAAGAAAGTACTCCTGAAACACTTTTTGA
TGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

75.767

93.678

0.71
  recA Latilactobacillus sakei subsp. sakei 23K

69.006

98.276

0.678
  recA Streptococcus mutans UA159

65.143

100

0.655
  recA Streptococcus pneumoniae TIGR4

65.205

98.276

0.641
  recA Streptococcus pneumoniae Rx1

65.205

98.276

0.641
  recA Streptococcus pneumoniae D39

65.205

98.276

0.641
  recA Streptococcus pneumoniae R6

65.205

98.276

0.641
  recA Streptococcus mitis SK321

64.638

99.138

0.641
  recA Streptococcus pyogenes NZ131

67.173

94.54

0.635
  recA Streptococcus mitis NCTC 12261

65.465

95.69

0.626
  recA Lactococcus lactis subsp. cremoris KW2

65.257

95.115

0.621
  recA Neisseria gonorrhoeae strain FA1090

62.5

98.851

0.618
  recA Neisseria gonorrhoeae MS11

62.5

98.851

0.618
  recA Neisseria gonorrhoeae MS11

62.5

98.851

0.618
  recA Acinetobacter baylyi ADP1

62.391

98.563

0.615
  recA Acinetobacter baumannii D1279779

61.318

100

0.615
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.919

98.851

0.612
  recA Helicobacter pylori 26695

63.72

94.253

0.601
  recA Helicobacter pylori strain NCTC11637

63.415

94.253

0.598
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.804

93.678

0.598
  recA Vibrio cholerae strain A1552

63.804

93.678

0.598
  recA Glaesserella parasuis strain SC1401

57.88

100

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

95.115

0.58
  recA Ralstonia pseudosolanacearum GMI1000

64.217

89.943

0.578
  recA Pseudomonas stutzeri DSM 10701

61.35

93.678

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.938

91.954

0.56