Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RAM43_RS08145 Genome accession   NZ_CP132394
Coordinates   1660081..1661124 (-) Length   347 a.a.
NCBI ID   WP_014614049.1    Uniprot ID   A0A166NCN9
Organism   Staphylococcus pseudintermedius strain CUVET18-689     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1655081..1666124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM43_RS08125 (RAM43_08065) - 1655218..1657392 (-) 2175 WP_096533534.1 heavy metal translocating P-type ATPase -
  RAM43_RS08130 (RAM43_08070) - 1657376..1657756 (-) 381 WP_037543159.1 ArsR/SmtB family transcription factor -
  RAM43_RS08135 (RAM43_08075) - 1657954..1658172 (+) 219 WP_014614046.1 hypothetical protein -
  RAM43_RS08140 (RAM43_08080) rny 1658295..1659854 (-) 1560 WP_037543160.1 ribonuclease Y -
  RAM43_RS08145 (RAM43_08085) recA 1660081..1661124 (-) 1044 WP_014614049.1 recombinase RecA Machinery gene
  RAM43_RS08150 (RAM43_08090) - 1661263..1662438 (-) 1176 WP_096538245.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  RAM43_RS08155 (RAM43_08095) pgsA 1662659..1663243 (-) 585 WP_096538247.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RAM43_RS08160 (RAM43_08100) - 1663285..1663680 (-) 396 WP_096538249.1 helix-turn-helix domain-containing protein -
  RAM43_RS08165 (RAM43_08105) - 1663699..1664544 (-) 846 WP_096535762.1 DUF3388 domain-containing protein -
  RAM43_RS08170 (RAM43_08110) ymfI 1664601..1665305 (-) 705 WP_096538251.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37942.97 Da        Isoelectric Point: 5.0169

>NTDB_id=869065 RAM43_RS08145 WP_014614049.1 1660081..1661124(-) (recA) [Staphylococcus pseudintermedius strain CUVET18-689]
MDNERQKALDTVIKNMEKSFGKGAVMKLGENKDRRVSSVSSGSVTLDHALGVGGYPKGRIIEVYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIIIVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSAAISKSKTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFKVAEVDIMYGKGISREGELIDLGVQYDIVDKSGAWYSYNGERMGQGKENVKQFLLENPKLEDEIDR
KLREKLGIYDGDVEESEQEETQTLFDE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=869065 RAM43_RS08145 WP_014614049.1 1660081..1661124(-) (recA) [Staphylococcus pseudintermedius strain CUVET18-689]
TTGGATAATGAACGTCAAAAAGCGCTAGATACAGTAATTAAAAACATGGAAAAATCATTTGGTAAAGGTGCCGTAATGAA
ACTGGGCGAGAATAAAGATCGCCGTGTTTCAAGTGTTTCAAGTGGTTCGGTAACGCTAGACCATGCATTAGGGGTTGGCG
GCTATCCTAAAGGTCGTATCATCGAAGTTTATGGCCCCGAAAGTTCTGGTAAAACAACGGTTGCTTTACATGCCATTGCT
GAAGTACAAAAAAATGGCGGTGTTGCCGCATTTATTGATGCCGAACACGCACTCGATCCAGTTTACGCTGAAGCATTAGG
TGTAGATATTGATAACTTATACCTTTCACAACCAGACCACGGTGAACAAGGTCTTGAAATTGCAGAGGCGTTTGTCAGAA
GTGGTGCAGTGGATATTATCATTGTTGACTCAGTTGCGGCATTGACTCCTAAAGCTGAAATTGAAGGTGAAATGGGTGAT
ACGCATGTTGGTTTACAAGCGCGTTTAATGTCTCAAGCATTGCGTAAACTTTCTGCAGCCATTTCAAAATCAAAAACAAC
AGCTATCTTTATTAACCAAATTCGTGAAAAAGTAGGCGTTATGTTCGGTAACCCTGAAACGACACCAGGGGGCCGAGCTC
TGAAATTCTACAGCTCAGTTCGTTTAGAAGTGCGTCGTGCTGAACAATTGAAACAAGGTCAAGATATTGTAGGTAACCGT
ACTAAAATTAAAGTGGTTAAAAATAAAGTCGCACCACCATTCAAAGTTGCAGAAGTGGATATCATGTATGGTAAAGGGAT
TTCACGCGAAGGCGAATTGATTGATTTAGGTGTACAATACGATATCGTTGATAAATCAGGTGCTTGGTATTCATATAACG
GTGAGCGTATGGGTCAAGGTAAAGAGAATGTAAAACAATTCCTACTTGAAAACCCTAAACTTGAAGATGAAATTGACCGT
AAATTACGTGAAAAACTCGGCATTTATGATGGTGATGTAGAAGAATCTGAACAAGAAGAAACACAAACACTTTTTGATGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A166NCN9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.994

93.948

0.723
  recA Latilactobacillus sakei subsp. sakei 23K

69.828

100

0.7
  recA Streptococcus mutans UA159

65.903

100

0.663
  recA Streptococcus pyogenes NZ131

69.909

94.813

0.663
  recA Streptococcus pneumoniae D39

65.517

100

0.657
  recA Streptococcus pneumoniae R6

65.517

100

0.657
  recA Streptococcus pneumoniae TIGR4

65.517

100

0.657
  recA Streptococcus pneumoniae Rx1

65.517

100

0.657
  recA Streptococcus mitis NCTC 12261

65.598

98.847

0.648
  recA Streptococcus mitis SK321

65.306

98.847

0.646
  recA Acinetobacter baumannii D1279779

62.644

100

0.628
  recA Lactococcus lactis subsp. cremoris KW2

65.559

95.389

0.625
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

98.271

0.625
  recA Neisseria gonorrhoeae MS11

62.281

98.559

0.614
  recA Neisseria gonorrhoeae MS11

62.281

98.559

0.614
  recA Neisseria gonorrhoeae strain FA1090

62.281

98.559

0.614
  recA Acinetobacter baylyi ADP1

64.724

93.948

0.608
  recA Helicobacter pylori 26695

63.11

94.524

0.597
  recA Helicobacter pylori strain NCTC11637

62.805

94.524

0.594
  recA Vibrio cholerae strain A1552

63.19

93.948

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.19

93.948

0.594
  recA Ralstonia pseudosolanacearum GMI1000

64.856

90.202

0.585
  recA Pseudomonas stutzeri DSM 10701

61.656

93.948

0.579
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.423

95.389

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.382

91.931

0.573
  recA Glaesserella parasuis strain SC1401

60.991

93.084

0.568