Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RAM07_RS03390 Genome accession   NZ_CP132379
Coordinates   677171..678283 (+) Length   370 a.a.
NCBI ID   WP_306269895.1    Uniprot ID   -
Organism   Lactobacillus helsingborgensis strain K-FP18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 672171..683283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM07_RS03365 (RAM07_03365) pgsA 672889..673449 (+) 561 WP_306269892.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RAM07_RS03370 (RAM07_03370) - 673610..674788 (+) 1179 WP_306269893.1 ABC transporter ATP-binding protein -
  RAM07_RS03375 (RAM07_03375) - 674790..675413 (+) 624 WP_306269894.1 ABC transporter permease -
  RAM07_RS03380 (RAM07_03380) - 675427..676362 (+) 936 WP_038521872.1 osmoprotectant ABC transporter substrate-binding protein -
  RAM07_RS03385 (RAM07_03385) - 676362..677027 (+) 666 WP_038521875.1 ABC transporter permease -
  RAM07_RS03390 (RAM07_03390) recA 677171..678283 (+) 1113 WP_306269895.1 recombinase RecA Machinery gene
  RAM07_RS03395 (RAM07_03395) rny 678415..680046 (+) 1632 WP_306269896.1 ribonuclease Y -
  RAM07_RS03400 (RAM07_03400) - 680152..681306 (+) 1155 WP_038521883.1 glycosyltransferase family 4 protein -
  RAM07_RS03405 (RAM07_03405) - 681343..682005 (-) 663 WP_306269897.1 YigZ family protein -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39961.34 Da        Isoelectric Point: 5.4322

>NTDB_id=868847 RAM07_RS03390 WP_306269895.1 677171..678283(+) (recA) [Lactobacillus helsingborgensis strain K-FP18]
MAKDEKQAALENALKKIEKNFGKGAVMRMGDKADTKISTIPSGSLALDAALGVGGYPRGRIVEIYGPESSGKTTVALHAV
AEVQKRGGTAAYIDAENAMDPAYAEALGVDVDSLILSQPNTGEEGLQIADTLITSGAIDILVVDSVAALVPQAEIDGEMG
DSHVGLQARLMSQALRKLSGNINKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYATIRLEIRRAEKIKQTGGEITG
NRVKIKVVKNKVAPPFKVAEVDMMYGKGISQSGELLDMAADKDIIAKAGSWYSYNDERIGQGRENAKKYLEDNPEIYDEV
QKQVRQAYGIDEESVAEREDPEKIKEKKAKNAANTEKEASDKKEADSKSN

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=868847 RAM07_RS03390 WP_306269895.1 677171..678283(+) (recA) [Lactobacillus helsingborgensis strain K-FP18]
TTGGCCAAAGATGAAAAACAGGCCGCATTGGAAAATGCGCTTAAGAAAATTGAGAAAAATTTTGGTAAAGGCGCCGTTAT
GCGAATGGGCGATAAGGCCGATACTAAGATTTCGACTATTCCCTCAGGCTCGCTTGCTCTTGATGCAGCCTTGGGTGTTG
GCGGCTATCCCCGGGGTAGAATTGTAGAAATATATGGACCAGAGTCTTCTGGTAAAACTACTGTTGCGCTACATGCGGTA
GCTGAAGTGCAAAAAAGAGGCGGAACTGCTGCTTATATTGATGCTGAAAATGCCATGGATCCGGCATATGCCGAAGCTTT
AGGCGTTGATGTTGACTCACTAATCTTATCTCAACCCAATACTGGTGAAGAAGGATTGCAAATTGCTGATACTTTAATTA
CAAGTGGCGCAATTGATATTTTAGTTGTTGATTCGGTTGCAGCACTTGTACCTCAAGCCGAAATTGACGGAGAAATGGGC
GATAGCCATGTTGGTCTGCAAGCTCGTTTGATGAGCCAAGCCCTCCGTAAACTTTCTGGTAATATCAATAAGACTAAAAC
TATTGCAATTTTTATTAACCAAATTCGTGAAAAAGTCGGCATTATGTTTGGTAATCCTGAAACTACCCCTGGTGGTCGTG
CGCTTAAGTTCTACGCAACTATTCGCTTGGAGATTAGAAGAGCCGAAAAGATTAAACAAACTGGTGGAGAAATCACCGGT
AACCGTGTGAAAATTAAAGTTGTCAAAAATAAGGTTGCTCCACCTTTTAAAGTTGCTGAAGTTGATATGATGTACGGCAA
AGGTATCTCTCAAAGTGGTGAGCTTCTTGATATGGCAGCCGACAAAGACATTATCGCAAAGGCTGGTTCATGGTATTCAT
ATAACGATGAGCGAATTGGACAAGGTCGTGAAAACGCTAAAAAGTATCTGGAAGATAATCCGGAAATTTATGATGAAGTG
CAGAAGCAGGTTCGTCAGGCCTATGGTATTGATGAGGAATCGGTTGCTGAGCGCGAAGACCCAGAAAAAATAAAAGAGAA
AAAAGCTAAAAACGCTGCAAATACAGAAAAGGAAGCTTCTGATAAAAAAGAAGCCGACAGCAAAAGCAATTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

77.843

92.703

0.722
  recA Streptococcus mutans UA159

66.209

98.378

0.651
  recA Streptococcus pneumoniae Rx1

67.416

96.216

0.649
  recA Streptococcus pneumoniae D39

67.416

96.216

0.649
  recA Streptococcus pneumoniae R6

67.416

96.216

0.649
  recA Streptococcus pneumoniae TIGR4

67.416

96.216

0.649
  recA Streptococcus mitis NCTC 12261

69.006

92.432

0.638
  recA Streptococcus mitis SK321

68.421

92.432

0.632
  recA Bacillus subtilis subsp. subtilis str. 168

70.091

89.459

0.627
  recA Streptococcus pyogenes NZ131

69.301

88.919

0.616
  recA Lactococcus lactis subsp. cremoris KW2

66.667

90

0.6
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.805

88.649

0.557
  recA Neisseria gonorrhoeae strain FA1090

61.398

88.919

0.546
  recA Neisseria gonorrhoeae MS11

61.398

88.919

0.546
  recA Neisseria gonorrhoeae MS11

61.398

88.919

0.546
  recA Helicobacter pylori 26695

57.434

92.703

0.532
  recA Helicobacter pylori strain NCTC11637

57.434

92.703

0.532
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.647

91.892

0.53
  recA Acinetobacter baylyi ADP1

60.062

87.297

0.524
  recA Acinetobacter baumannii D1279779

59.443

87.297

0.519
  recA Pseudomonas stutzeri DSM 10701

59.627

87.027

0.519
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.824

87.297

0.514
  recA Glaesserella parasuis strain SC1401

56.928

89.73

0.511
  recA Vibrio cholerae strain A1552

58.514

87.297

0.511
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.514

87.297

0.511
  recA Ralstonia pseudosolanacearum GMI1000

59.873

84.865

0.508