Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RAM13_RS02565 Genome accession   NZ_CP132378
Coordinates   486115..487227 (+) Length   370 a.a.
NCBI ID   WP_046306467.1    Uniprot ID   A0A0F4LRH7
Organism   Lactobacillus apis strain K-MP7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 481115..492227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM13_RS02540 (RAM13_02540) - 481857..482339 (-) 483 WP_244986813.1 helix-turn-helix domain-containing protein -
  RAM13_RS02545 (RAM13_02545) - 482555..483730 (+) 1176 WP_187157741.1 ABC transporter ATP-binding protein -
  RAM13_RS02550 (RAM13_02550) - 483732..484355 (+) 624 WP_306266908.1 ABC transporter permease -
  RAM13_RS02555 (RAM13_02555) - 484369..485304 (+) 936 WP_198182817.1 osmoprotectant ABC transporter substrate-binding protein -
  RAM13_RS02560 (RAM13_02560) - 485304..485963 (+) 660 WP_046306465.1 ABC transporter permease -
  RAM13_RS02565 (RAM13_02565) recA 486115..487227 (+) 1113 WP_046306467.1 recombinase RecA Machinery gene
  RAM13_RS02570 (RAM13_02570) rny 487357..488988 (+) 1632 WP_306266912.1 ribonuclease Y -
  RAM13_RS02575 (RAM13_02575) - 489098..490255 (+) 1158 WP_046306471.1 glycosyltransferase family 4 protein -
  RAM13_RS02580 (RAM13_02580) - 490269..490931 (-) 663 WP_306266915.1 YigZ family protein -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40018.35 Da        Isoelectric Point: 5.2676

>NTDB_id=868830 RAM13_RS02565 WP_046306467.1 486115..487227(+) (recA) [Lactobacillus apis strain K-MP7]
MAKDEKQAALENALKKIEKNFGKGAVMRMGDKADTKISTVPSGSLALDAALGVGGYPRGRIVEIYGPESSGKTTVALHAV
AEVQKRGGTAAYIDAENAMDPAYAEALGVDVDSLILSQPNTGEEGLQIADTLITSGAIDILIVDSVAALVPQAEIDGEMG
DSHVGLQARLMSQALRKLSGNINKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEIRRAEKIKQTGGEITG
NRVKIKVVKNKVAPPFKVAEVDMMYGKGISQSGELLDMAADKDIVAKAGSWYSYNDERIGQGRENAKAYLEDHPDIYDEV
QQKVRQAYGIDEESIAEREDPEKVKSKKAKEAESTEKEVSEKKETDNKSN

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=868830 RAM13_RS02565 WP_046306467.1 486115..487227(+) (recA) [Lactobacillus apis strain K-MP7]
TTGGCCAAAGATGAAAAGCAGGCTGCATTGGAAAATGCGCTGAAAAAAATCGAAAAGAATTTTGGTAAAGGGGCCGTTAT
GCGCATGGGCGACAAGGCGGATACCAAAATTTCAACCGTTCCATCCGGCTCGCTTGCATTAGATGCAGCTCTTGGGGTTG
GCGGCTATCCGCGAGGCAGAATTGTTGAAATTTATGGACCTGAATCTTCAGGTAAAACTACGGTTGCTTTGCACGCTGTA
GCTGAAGTGCAAAAGCGTGGCGGAACGGCTGCGTATATTGATGCGGAAAACGCAATGGATCCAGCATATGCGGAAGCTTT
AGGTGTTGATGTAGACTCACTTATCCTATCCCAGCCAAATACTGGTGAAGAAGGTTTGCAAATTGCGGACACACTGATTA
CGAGTGGTGCAATTGACATTTTAATTGTTGACTCCGTAGCTGCCTTAGTACCTCAAGCAGAAATTGATGGCGAGATGGGG
GATAGTCACGTTGGTTTGCAGGCTCGTTTGATGAGTCAGGCCTTGCGTAAACTGTCCGGAAACATTAATAAGACGAAAAC
GATTGCGATTTTTATTAACCAGATTCGTGAAAAAGTCGGTATTATGTTTGGTAATCCAGAAACCACCCCTGGTGGCCGTG
CCCTTAAGTTCTATTCTACGATTAGACTAGAGATTAGAAGAGCAGAAAAAATCAAGCAAACTGGTGGAGAAATTACTGGT
AACCGTGTCAAAATTAAAGTGGTTAAAAATAAGGTTGCGCCGCCATTTAAAGTTGCTGAAGTTGATATGATGTACGGCAA
GGGTATTTCACAAAGTGGTGAATTACTTGATATGGCTGCTGATAAAGATATAGTAGCTAAAGCGGGTTCTTGGTATTCAT
ATAACGATGAAAGAATTGGTCAAGGGCGTGAAAATGCCAAGGCATATCTTGAAGACCATCCTGATATTTATGATGAAGTT
CAACAGAAGGTAAGGCAGGCTTATGGAATTGATGAAGAATCAATTGCTGAGCGTGAAGACCCTGAAAAAGTTAAAAGTAA
AAAGGCTAAAGAAGCTGAGAGTACTGAAAAGGAGGTTTCCGAAAAAAAGGAAACCGACAACAAAAGTAACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F4LRH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

78.717

92.703

0.73
  recA Streptococcus mutans UA159

64.324

100

0.643
  recA Streptococcus mitis NCTC 12261

65

97.297

0.632
  recA Streptococcus pneumoniae TIGR4

65.169

96.216

0.627
  recA Streptococcus pneumoniae Rx1

65.169

96.216

0.627
  recA Streptococcus pneumoniae D39

65.169

96.216

0.627
  recA Streptococcus pneumoniae R6

65.169

96.216

0.627
  recA Bacillus subtilis subsp. subtilis str. 168

70.091

89.459

0.627
  recA Streptococcus pyogenes NZ131

68.997

88.919

0.614
  recA Streptococcus mitis SK321

66.374

92.432

0.614
  recA Lactococcus lactis subsp. cremoris KW2

66.967

90

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.28

88.649

0.543
  recA Neisseria gonorrhoeae strain FA1090

60.486

88.919

0.538
  recA Neisseria gonorrhoeae MS11

60.486

88.919

0.538
  recA Neisseria gonorrhoeae MS11

60.486

88.919

0.538
  recA Helicobacter pylori 26695

57.434

92.703

0.532
  recA Helicobacter pylori strain NCTC11637

57.434

92.703

0.532
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.765

91.892

0.522
  recA Acinetobacter baylyi ADP1

59.752

87.297

0.522
  recA Acinetobacter baumannii D1279779

59.133

87.297

0.516
  recA Pseudomonas stutzeri DSM 10701

58.696

87.027

0.511
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.204

87.297

0.508
  recA Ralstonia pseudosolanacearum GMI1000

59.554

84.865

0.505
  recA Glaesserella parasuis strain SC1401

56.024

89.73

0.503
  recA Vibrio cholerae O1 biovar El Tor strain E7946

56.966

87.297

0.497
  recA Vibrio cholerae strain A1552

56.966

87.297

0.497