Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   Q9451_RS24475 Genome accession   NZ_CP132350
Coordinates   5428690..5429757 (-) Length   355 a.a.
NCBI ID   WP_012270915.1    Uniprot ID   A0A7Y3UXX0
Organism   Pseudomonas sp. NY8896     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5423690..5434757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9451_RS24440 (Q9451_24445) - 5424025..5424390 (-) 366 WP_010952700.1 diacylglycerol kinase -
  Q9451_RS24445 (Q9451_24450) erdR 5424464..5425114 (-) 651 WP_012270921.1 response regulator transcription factor ErdR -
  Q9451_RS24450 (Q9451_24455) - 5425294..5426004 (-) 711 WP_012270920.1 tRNA-uridine aminocarboxypropyltransferase -
  Q9451_RS24455 (Q9451_24460) - 5426223..5426642 (+) 420 WP_012270919.1 quorum-sensing-regulated virulence factor family protein -
  Q9451_RS24460 (Q9451_24465) - 5426658..5426867 (-) 210 WP_012270918.1 hypothetical protein -
  Q9451_RS24465 (Q9451_24470) - 5427028..5428149 (+) 1122 WP_012270917.1 LOG family protein -
  Q9451_RS24470 (Q9451_24475) recX 5428199..5428669 (-) 471 WP_012270916.1 recombination regulator RecX -
  Q9451_RS24475 (Q9451_24480) recA 5428690..5429757 (-) 1068 WP_012270915.1 recombinase RecA Machinery gene
  Q9451_RS24480 (Q9451_24485) - 5429861..5430343 (-) 483 WP_012270914.1 CinA family protein -
  Q9451_RS24485 (Q9451_24490) - 5430408..5431466 (-) 1059 WP_012270913.1 hypothetical protein -
  Q9451_RS24490 (Q9451_24495) mutS 5431653..5434226 (+) 2574 WP_345960797.1 DNA mismatch repair protein MutS -
  Q9451_RS24495 (Q9451_24500) fdxA 5434367..5434690 (+) 324 WP_012270863.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37503.86 Da        Isoelectric Point: 5.3279

>NTDB_id=868353 Q9451_RS24475 WP_012270915.1 5428690..5429757(-) (recA) [Pseudomonas sp. NY8896]
MDDNKKRALAAALGQIERQFGKGAVMRMGDQERQGIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYAYQGNKIGQGKANAAKYLAENPAIGAEIEK
QIREKLLKAGAAAEAGKAAAVDASADDVADAEAGY

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=868353 Q9451_RS24475 WP_012270915.1 5428690..5429757(-) (recA) [Pseudomonas sp. NY8896]
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGTAAAGGCGCGGTCATGCG
CATGGGTGACCAGGAGCGTCAAGGCATTCCGGCCATCTCCACCGGCTCGCTGGGCCTGGACATCGCCCTTGGCATCGGCG
GCCTGCCAAAAGGCCGTATCGTCGAGATCTACGGCCCGGAATCGTCGGGCAAGACCACGCTGACCCTATCGGTCATCGCC
GAAGCTCAGAAAAACGGTGCCACCTGCGCCTTCGTCGACGCCGAACACGCCCTCGACCCTGAGTACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTTTCGCAGCCGGACACTGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCGTTGACGTGATCATCGTCGACTCCGTGGCCGCGTTGGTGCCGAAGGCCGAGATCGAAGGCGAGATGGGTGAC
ATGCACGTCGGCCTGCAGGCTCGCCTGATGTCCCAGGCGCTGCGCAAGATCACTGGTAACATCAAGAACGCTAACTGCCT
GGTCATCTTCATCAACCAGATCCGTATGAAGATTGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCCC
TGAAGTTCTACGCCTCGGTGCGTCTGGATATCCGTCGTACCGGCGCGGTCAAGGAAGGCGACGAAGTGGTCGGTAGCGAA
ACCCGCGTCAAGATCGTCAAGAACAAGGTATCGCCTCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAAGGTAT
CTACCGTAACGGCGAGATCATTGACCTGGGTGTGTCTCAGGGCCTGGTCGAGAAATCCGGTGCCTGGTACGCCTACCAGG
GCAACAAGATCGGTCAAGGTAAAGCCAACGCTGCCAAGTATCTGGCGGAAAACCCGGCTATTGGTGCCGAGATCGAGAAG
CAGATCCGTGAAAAGCTGTTGAAAGCCGGTGCTGCCGCTGAAGCCGGCAAGGCTGCCGCCGTTGATGCCAGTGCCGACGA
TGTGGCTGACGCCGAAGCCGGTTATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y3UXX0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

88.636

99.155

0.879
  recA Acinetobacter baylyi ADP1

76.758

92.113

0.707
  recA Acinetobacter baumannii D1279779

74.924

93.239

0.699
  recA Glaesserella parasuis strain SC1401

69.429

98.592

0.685
  recA Vibrio cholerae strain A1552

74.312

92.113

0.685
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.312

92.113

0.685
  recA Ralstonia pseudosolanacearum GMI1000

71.045

94.366

0.67
  recA Neisseria gonorrhoeae MS11

71.605

91.268

0.654
  recA Neisseria gonorrhoeae MS11

71.605

91.268

0.654
  recA Neisseria gonorrhoeae strain FA1090

71.605

91.268

0.654
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

92.113

0.594
  recA Helicobacter pylori strain NCTC11637

63.303

92.113

0.583
  recA Helicobacter pylori 26695

62.691

92.113

0.577
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.631

93.239

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

90.423

0.563
  recA Streptococcus mitis SK321

56.25

99.155

0.558
  recA Streptococcus mitis NCTC 12261

56.25

99.155

0.558
  recA Streptococcus pyogenes NZ131

55.556

98.873

0.549
  recA Streptococcus pneumoniae R6

58.896

91.831

0.541
  recA Streptococcus pneumoniae TIGR4

58.896

91.831

0.541
  recA Streptococcus pneumoniae Rx1

58.896

91.831

0.541
  recA Streptococcus pneumoniae D39

58.896

91.831

0.541
  recA Streptococcus mutans UA159

58.769

91.549

0.538
  recA Latilactobacillus sakei subsp. sakei 23K

59.19

90.423

0.535
  recA Lactococcus lactis subsp. cremoris KW2

57.276

90.986

0.521
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.828

91.831

0.513