Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RAB70_RS15050 Genome accession   NZ_CP132342
Coordinates   3590743..3591780 (-) Length   345 a.a.
NCBI ID   WP_148828190.1    Uniprot ID   -
Organism   Xanthomonas sontii strain PPL1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3585743..3596780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAB70_RS15025 (RAB70_15025) - 3586650..3586781 (-) 132 WP_265529335.1 DUF6538 domain-containing protein -
  RAB70_RS15035 (RAB70_15035) csrA 3587025..3587237 (-) 213 WP_010341308.1 carbon storage regulator CsrA -
  RAB70_RS15040 (RAB70_15040) alaS 3587374..3590025 (-) 2652 WP_148828188.1 alanine--tRNA ligase -
  RAB70_RS15045 (RAB70_15045) recX 3590132..3590626 (-) 495 WP_148828189.1 recombination regulator RecX -
  RAB70_RS15050 (RAB70_15050) recA 3590743..3591780 (-) 1038 WP_148828190.1 recombinase RecA Machinery gene
  RAB70_RS15055 (RAB70_15055) lexA 3591977..3592612 (-) 636 WP_017910626.1 transcriptional repressor LexA -
  RAB70_RS15060 (RAB70_15060) ubiB 3592946..3594622 (-) 1677 WP_148828191.1 2-polyprenylphenol 6-hydroxylase -
  RAB70_RS15065 (RAB70_15065) - 3594657..3595151 (-) 495 WP_017914255.1 CinA family protein -
  RAB70_RS15070 (RAB70_15070) hflX 3595318..3596643 (-) 1326 WP_026144705.1 ribosome rescue GTPase HflX -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37136.63 Da        Isoelectric Point: 4.9648

>NTDB_id=868282 RAB70_RS15050 WP_148828190.1 3590743..3591780(-) (recA) [Xanthomonas sontii strain PPL1]
MDENKKRALAAALSQIEKQFGKGSVMRMGDRVIEAVEVIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
QCQKNGGTAAFIDAEHALDPIYAAKLGVNVDELLLSQPDTGEQALEIADMLVRSGSVDIVVVDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVEKAGAWYSYGSERIGQGKDNARGYLRDNPQVATKL
ESELREKFQPTEIAPSEAEAEDDDA

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=868282 RAB70_RS15050 WP_148828190.1 3590743..3591780(-) (recA) [Xanthomonas sontii strain PPL1]
ATGGACGAGAACAAGAAGCGCGCGCTTGCTGCCGCCCTGAGCCAGATCGAGAAGCAGTTCGGCAAGGGCTCGGTGATGCG
GATGGGCGATCGCGTCATCGAAGCGGTGGAAGTGATTCCGACCGGCTCGCTGATGCTGGACATCGCACTGGGCATCGGCG
GCCTGCCGAAGGGCCGCGTGGTCGAGATCTACGGTCCGGAATCCTCGGGCAAGACCACCCTGACCCTGCAGGCCATCGCG
CAGTGCCAGAAGAACGGCGGCACCGCCGCGTTCATCGATGCCGAGCACGCGCTGGACCCGATCTACGCCGCCAAGCTGGG
TGTCAACGTCGACGAGCTGCTGCTGTCGCAGCCGGACACCGGCGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGCT
CGGGCTCGGTGGACATCGTGGTGGTCGACTCGGTCGCCGCGCTGACCCCCAAGGCCGAAATCGAAGGCGAGATGGGCGAC
CAGTTGCCGGGCCTGCAGGCGCGCCTGATGAGCCAGGCGCTGCGCAAGCTCACCGGCAACATCAAGCGCTCCAACACCCT
GGTGGTGTTCATCAACCAGTTGCGCATGAAGATTGGCGTGATGATGCCGGGCCAGAGCCCGGAAACCACCACCGGTGGCA
ACGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCAAGATCAAGGTCGTCAAGAACAAGCTGGCGCCGCCGTTCAAGCAGGTCGTCACCGAAATCCTCTACGGCGA
GGGCATCAGCCGCGAGGGCGAACTGATCGACATGGGCGTGGAAGCCAAGCTGGTCGAGAAGGCCGGCGCCTGGTACAGCT
ACGGCAGCGAGCGCATCGGCCAGGGCAAGGACAACGCCCGCGGTTACCTGCGCGACAACCCGCAGGTCGCGACCAAGCTG
GAAAGCGAGCTGCGCGAGAAGTTCCAGCCCACGGAAATCGCCCCGAGCGAGGCCGAGGCGGAAGACGACGACGCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

73.171

95.072

0.696
  recA Vibrio cholerae strain A1552

69.364

100

0.696
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.364

100

0.696
  recA Acinetobacter baumannii D1279779

72.205

95.942

0.693
  recA Pseudomonas stutzeri DSM 10701

72.205

95.942

0.693
  recA Ralstonia pseudosolanacearum GMI1000

75

91.594

0.687
  recA Neisseria gonorrhoeae MS11

69.939

94.493

0.661
  recA Neisseria gonorrhoeae MS11

69.939

94.493

0.661
  recA Neisseria gonorrhoeae strain FA1090

69.939

94.493

0.661
  recA Glaesserella parasuis strain SC1401

66.087

100

0.661
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.473

96.812

0.614
  recA Streptococcus mutans UA159

59.259

100

0.603
  recA Latilactobacillus sakei subsp. sakei 23K

59.942

99.13

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

63.077

94.203

0.594
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.75

92.754

0.591
  recA Helicobacter pylori strain NCTC11637

61.145

96.232

0.588
  recA Streptococcus pyogenes NZ131

61.515

95.652

0.588
  recA Streptococcus pneumoniae R6

61.89

95.072

0.588
  recA Streptococcus mitis SK321

61.89

95.072

0.588
  recA Streptococcus pneumoniae TIGR4

61.89

95.072

0.588
  recA Streptococcus pneumoniae Rx1

61.89

95.072

0.588
  recA Streptococcus pneumoniae D39

61.89

95.072

0.588
  recA Streptococcus mitis NCTC 12261

61.585

95.072

0.586
  recA Helicobacter pylori 26695

60.843

96.232

0.586
  recA Lactococcus lactis subsp. cremoris KW2

60

94.203

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.509

94.493

0.562