Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   Q8L25_RS07175 Genome accession   NZ_CP132339
Coordinates   1591403..1592509 (+) Length   368 a.a.
NCBI ID   WP_308924201.1    Uniprot ID   -
Organism   Janthinobacterium sp. J1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1586403..1597509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8L25_RS07155 - 1586632..1588680 (-) 2049 WP_308924198.1 sodium:solute symporter family protein -
  Q8L25_RS07160 - 1588677..1588964 (-) 288 WP_308924199.1 DUF4212 domain-containing protein -
  Q8L25_RS07165 - 1588957..1590492 (-) 1536 WP_374694241.1 sensor histidine kinase N-terminal domain-containing protein -
  Q8L25_RS07170 - 1590489..1591196 (-) 708 WP_308924200.1 response regulator transcription factor -
  Q8L25_RS07175 recA 1591403..1592509 (+) 1107 WP_308924201.1 recombinase RecA Machinery gene
  Q8L25_RS07180 recX 1592630..1593088 (+) 459 WP_308924202.1 recombination regulator RecX -
  Q8L25_RS07185 - 1593183..1594721 (+) 1539 WP_308924203.1 class I SAM-dependent methyltransferase -
  Q8L25_RS07190 - 1595009..1595569 (+) 561 WP_308924204.1 DUF2889 domain-containing protein -
  Q8L25_RS07195 sucC 1595646..1596815 (+) 1170 WP_308924205.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 39097.73 Da        Isoelectric Point: 6.3120

>NTDB_id=868261 Q8L25_RS07175 WP_308924201.1 1591403..1592509(+) (recA) [Janthinobacterium sp. J1-1]
MDDKRAVVPASEKAKALAAALAQIEKQFGKGSVMRMDASAPIEEVQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK
TTLTLQTIAEMQKLGGTCAFIDAEHALDVGYAQKLGVNLHELLISQPDTGEQALEICDALVRSGSVDLVVIDSVAALTPR
AEIEGDMGDSLPGLQARLMSQALRKLTGSINRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGSIK
SGDEVIGNETKVKVVKNKIAPPFKEAHFDILYGAGTSREGEILDLGSDAKIVEKSGSWYSYNGERIGQGKDNARAFLQER
PALAREIENKVRASLGVRELPPLAAEKPEKADKAADKAAKAAEAKAAE

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=868261 Q8L25_RS07175 WP_308924201.1 1591403..1592509(+) (recA) [Janthinobacterium sp. J1-1]
ATGGACGATAAAAGAGCTGTAGTACCCGCATCGGAAAAAGCCAAGGCGCTGGCCGCCGCGCTGGCACAGATCGAGAAGCA
GTTTGGCAAAGGTTCGGTCATGCGCATGGATGCCAGCGCACCGATCGAAGAAGTGCAAGTCGTGTCGACCGGTTCGCTCG
GCCTCGATATCGCGCTGGGCGTGGGCGGCTTGCCGCGCGGCCGCGTGGTGGAAATCTACGGTCCCGAGTCGTCGGGTAAA
ACCACGCTGACCCTGCAAACCATCGCCGAAATGCAAAAACTGGGCGGCACCTGCGCCTTTATCGACGCCGAGCACGCACT
GGACGTCGGCTACGCCCAAAAGCTGGGCGTGAACCTGCACGAACTGCTGATCTCGCAACCGGACACGGGCGAGCAGGCGC
TGGAAATTTGCGACGCCCTCGTGCGTTCGGGCAGCGTCGACCTGGTGGTGATCGACTCGGTGGCGGCGCTGACGCCACGC
GCCGAGATCGAAGGCGACATGGGCGACTCGTTGCCAGGCCTGCAGGCGCGTCTGATGTCGCAGGCGCTGCGCAAGCTGAC
CGGCTCGATCAACCGCACCAATACCCTGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGTC
CGGAAACCACCACCGGCGGCAATGCGCTGAAATTCTACGCTTCCGTGCGCCTGGATATCCGCCGCACCGGCTCGATCAAG
TCGGGCGACGAAGTGATCGGCAACGAAACCAAGGTCAAGGTCGTCAAGAACAAGATCGCGCCACCGTTCAAGGAAGCGCA
CTTCGACATCCTGTACGGCGCAGGCACCTCGCGCGAAGGCGAGATCCTCGATCTCGGTTCGGACGCGAAGATCGTCGAGA
AATCCGGTTCCTGGTACAGCTACAACGGCGAACGCATCGGCCAGGGCAAGGACAACGCCCGCGCCTTCCTGCAAGAGCGC
CCGGCACTGGCGCGTGAAATCGAAAACAAGGTACGCGCCTCGCTGGGCGTGCGCGAACTGCCGCCGCTGGCCGCTGAAAA
GCCTGAAAAAGCCGATAAAGCCGCCGACAAGGCCGCCAAGGCTGCGGAAGCCAAAGCTGCCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.631

91.304

0.764
  recA Neisseria gonorrhoeae MS11

72.866

89.13

0.649
  recA Neisseria gonorrhoeae MS11

72.866

89.13

0.649
  recA Neisseria gonorrhoeae strain FA1090

72.866

89.13

0.649
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.412

92.391

0.641
  recA Vibrio cholerae strain A1552

69.412

92.391

0.641
  recA Glaesserella parasuis strain SC1401

66.571

94.293

0.628
  recA Pseudomonas stutzeri DSM 10701

70.898

87.772

0.622
  recA Acinetobacter baylyi ADP1

70.588

87.772

0.62
  recA Acinetobacter baumannii D1279779

70.279

87.772

0.617
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.366

90.489

0.601
  recA Helicobacter pylori 26695

62.391

93.207

0.582
  recA Streptococcus mutans UA159

60.34

95.924

0.579
  recA Helicobacter pylori strain NCTC11637

62.099

93.207

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

88.859

0.573
  recA Streptococcus mitis NCTC 12261

60.29

93.75

0.565
  recA Streptococcus pyogenes NZ131

63.222

89.402

0.565
  recA Streptococcus pneumoniae R6

62.236

89.946

0.56
  recA Streptococcus pneumoniae TIGR4

62.236

89.946

0.56
  recA Streptococcus pneumoniae Rx1

62.236

89.946

0.56
  recA Streptococcus pneumoniae D39

62.236

89.946

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.997

88.859

0.56
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.19

88.587

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

62.424

89.674

0.56
  recA Streptococcus mitis SK321

61.934

89.946

0.557
  recA Lactococcus lactis subsp. cremoris KW2

61.631

89.946

0.554