Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QTL86_RS04985 Genome accession   NZ_CP132338
Coordinates   1016399..1017460 (+) Length   353 a.a.
NCBI ID   WP_127066905.1    Uniprot ID   A0A5B9YEH3
Organism   Cellulosilyticum sp. ST5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1011399..1022460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTL86_RS04965 (QTL86_04945) - 1012358..1013566 (-) 1209 WP_013657471.1 argininosuccinate synthase -
  QTL86_RS04970 (QTL86_04950) - 1013849..1014493 (+) 645 WP_013657470.1 YesL family protein -
  QTL86_RS04975 (QTL86_04955) - 1014635..1014982 (+) 348 WP_013657469.1 YHS domain-containing protein -
  QTL86_RS04980 (QTL86_04960) - 1015092..1016321 (+) 1230 WP_127066906.1 competence/damage-inducible protein A -
  QTL86_RS04985 (QTL86_04965) recA 1016399..1017460 (+) 1062 WP_127066905.1 recombinase RecA Machinery gene
  QTL86_RS04990 (QTL86_04970) rny 1017629..1019215 (+) 1587 WP_013657465.1 ribonuclease Y -
  QTL86_RS04995 (QTL86_04975) purB 1019387..1020817 (+) 1431 WP_127066904.1 adenylosuccinate lyase -
  QTL86_RS05000 (QTL86_04980) - 1020988..1021554 (+) 567 WP_127066903.1 hypothetical protein -
  QTL86_RS05005 (QTL86_04985) flgB 1021817..1022185 (+) 369 WP_207669743.1 flagellar basal body rod protein FlgB -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38557.90 Da        Isoelectric Point: 4.9813

>NTDB_id=868232 QTL86_RS04985 WP_127066905.1 1016399..1017460(+) (recA) [Cellulosilyticum sp. ST5]
MNDESKKALDAAISQIQKQFGKGSIMKLGEATDTNVHTFPTGSLSLDIALGVGGLPKGRIVEVYGPESSGKTTVTLHMIA
EVQKQGGIAAFIDAEHALDPSYAAKLGVNIDELYISQPDNGEQALEIAETMVRSGAIDIIVVDSVAALVPRAEIEGDMGD
SHMGLQARLMSQALRKLTGVINKSKCTVIFINQLREKVGVMFGSNETTTGGRALKFYASIRLDVRKIETLKQSNEFIGSR
TRVKVVKNKVAPPFQQAEFDIMYGEGISKEGDVLDLATNIDIVNKSGAWYSYGDLRLGQGRENAKIYIKEHPELLLEIEN
KVRSHYGISALDETAHETKDEMNDKILMVDEEE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=868232 QTL86_RS04985 WP_127066905.1 1016399..1017460(+) (recA) [Cellulosilyticum sp. ST5]
ATGAATGATGAATCAAAAAAGGCATTAGATGCAGCCATTTCGCAAATACAAAAACAATTTGGTAAAGGTTCTATTATGAA
ATTGGGAGAAGCGACAGATACAAATGTGCATACCTTCCCAACAGGTTCTCTGAGCTTAGATATTGCACTTGGAGTAGGTG
GCCTGCCAAAAGGAAGAATTGTGGAGGTTTATGGCCCAGAATCTTCAGGTAAAACAACTGTTACTTTGCATATGATTGCC
GAAGTCCAGAAACAAGGTGGAATTGCGGCGTTTATTGATGCGGAACATGCTTTAGACCCATCTTATGCAGCTAAGTTAGG
CGTTAATATTGATGAACTTTATATTTCACAACCGGATAATGGTGAACAAGCTCTTGAAATTGCAGAAACTATGGTGCGTT
CTGGAGCAATTGATATTATTGTAGTAGACTCTGTTGCTGCGTTGGTTCCAAGAGCTGAAATAGAAGGTGATATGGGTGAT
TCTCATATGGGCTTACAAGCAAGATTAATGTCTCAAGCACTAAGAAAATTAACAGGTGTTATTAATAAATCAAAATGTAC
TGTCATTTTCATCAACCAACTTCGTGAAAAAGTTGGTGTTATGTTTGGTAGTAATGAAACAACTACTGGTGGCCGTGCGC
TTAAATTTTACGCATCTATTCGTCTAGATGTTCGTAAGATTGAAACTTTAAAACAAAGTAATGAGTTTATTGGAAGTCGT
ACACGTGTTAAAGTTGTAAAAAATAAAGTAGCACCACCTTTCCAACAAGCTGAATTTGATATTATGTACGGTGAGGGGAT
TTCAAAAGAAGGAGATGTACTTGATTTAGCAACTAATATCGATATTGTTAATAAAAGCGGTGCATGGTACTCTTACGGCG
ATTTACGTTTAGGCCAAGGAAGAGAGAATGCTAAAATTTATATCAAAGAGCATCCTGAACTTTTACTTGAGATAGAAAAT
AAAGTAAGAAGTCATTATGGGATTAGTGCGCTAGATGAAACTGCTCATGAAACAAAAGACGAAATGAATGATAAAATTTT
AATGGTGGATGAAGAGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B9YEH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

72.866

92.918

0.677
  recA Latilactobacillus sakei subsp. sakei 23K

64.957

99.433

0.646
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.988

92.918

0.632
  recA Acinetobacter baylyi ADP1

64.058

97.734

0.626
  recA Streptococcus pneumoniae Rx1

63.295

98.017

0.62
  recA Streptococcus pneumoniae D39

63.295

98.017

0.62
  recA Streptococcus pneumoniae R6

63.295

98.017

0.62
  recA Streptococcus pneumoniae TIGR4

63.295

98.017

0.62
  recA Streptococcus mitis NCTC 12261

64.035

96.884

0.62
  recA Streptococcus mitis SK321

63.848

97.167

0.62
  recA Streptococcus mutans UA159

60.278

100

0.615
  recA Neisseria gonorrhoeae MS11

62.356

98.584

0.615
  recA Neisseria gonorrhoeae MS11

62.356

98.584

0.615
  recA Neisseria gonorrhoeae strain FA1090

62.356

98.584

0.615
  recA Lactococcus lactis subsp. cremoris KW2

64.478

94.901

0.612
  recA Ralstonia pseudosolanacearum GMI1000

65.257

93.768

0.612
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.06

94.051

0.612
  recA Glaesserella parasuis strain SC1401

62.573

96.884

0.606
  recA Streptococcus pyogenes NZ131

64.35

93.768

0.603
  recA Acinetobacter baumannii D1279779

65.231

92.068

0.601
  recA Pseudomonas stutzeri DSM 10701

60.174

97.45

0.586
  recA Helicobacter pylori strain NCTC11637

62.5

92.918

0.581
  recA Helicobacter pylori 26695

62.5

92.918

0.581
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.158

91.501

0.578
  recA Vibrio cholerae strain A1552

63.158

91.501

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.813

90.652

0.569