Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   Q9293_RS01910 Genome accession   NZ_CP132333
Coordinates   437603..438661 (-) Length   352 a.a.
NCBI ID   WP_306249478.1    Uniprot ID   -
Organism   Geothrix sp. PMB-07     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 432603..443661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9293_RS01890 (Q9293_01890) - 432807..433811 (-) 1005 WP_306249474.1 isoaspartyl peptidase/L-asparaginase -
  Q9293_RS01895 (Q9293_01895) moaA 433825..434829 (-) 1005 WP_306249475.1 GTP 3',8-cyclase MoaA -
  Q9293_RS01900 (Q9293_01900) - 434891..436141 (+) 1251 WP_306249476.1 hypothetical protein -
  Q9293_RS01905 (Q9293_01905) - 436138..437481 (+) 1344 WP_306249477.1 tetratricopeptide repeat-containing serine protease family protein -
  Q9293_RS01910 (Q9293_01910) recA 437603..438661 (-) 1059 WP_306249478.1 recombinase RecA Machinery gene
  Q9293_RS01915 (Q9293_01915) - 438762..441185 (+) 2424 WP_306249479.1 ATP-binding protein -
  Q9293_RS01920 (Q9293_01920) - 441187..442383 (+) 1197 WP_306249480.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37523.01 Da        Isoelectric Point: 5.8198

>NTDB_id=868174 Q9293_RS01910 WP_306249478.1 437603..438661(-) (recA) [Geothrix sp. PMB-07]
MAAAEQDDRLKALTRTVADIERAFGKGSIMKLGDRMSGAEGIEVISTGSISLDSALGVGGVPKGRVVEVYGPEASGKTTL
ALHMVAQAQKKGGLAAYIDAEHALDPEYAQKLGVDVANLFISQPDSGEQALEICDQLVRSGALDIIVVDSVAALVPKAEI
DGEMGDSHVGLQARLMSQALRKMTGTISKTHTCVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDVRSIQSIKGNT
GDPLVATKDEDSSVIGKKTKVKVVKNKVAPPLKVATFDIMYGEGISRTSELVELGTQLEIIQKSGSWYSYKDSRLGQGAE
NVKKLFNDNPELADEVEGLIRERLGMKGAVEV

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=868174 Q9293_RS01910 WP_306249478.1 437603..438661(-) (recA) [Geothrix sp. PMB-07]
ATGGCCGCGGCCGAGCAAGACGATCGCCTCAAAGCCCTCACCCGAACCGTGGCCGACATCGAACGGGCCTTCGGCAAGGG
TTCCATCATGAAATTGGGCGACCGCATGAGCGGCGCCGAGGGCATCGAGGTCATCAGCACCGGCTCCATCTCCCTGGACA
GCGCCCTGGGCGTGGGCGGCGTGCCCAAGGGCCGCGTGGTCGAAGTCTATGGGCCGGAAGCCAGCGGCAAGACCACCCTG
GCCCTGCACATGGTGGCCCAGGCCCAGAAGAAGGGCGGCCTGGCCGCCTACATCGACGCCGAGCACGCCCTCGACCCCGA
ATACGCCCAGAAGCTGGGCGTGGACGTGGCCAACCTCTTCATCAGCCAGCCCGACAGCGGCGAGCAGGCTCTGGAAATCT
GCGACCAGCTGGTGCGCAGCGGCGCCCTCGACATCATCGTGGTGGACTCCGTGGCCGCCCTGGTGCCCAAGGCCGAAATC
GACGGCGAGATGGGCGACAGCCATGTGGGCCTGCAGGCCCGCCTCATGAGCCAGGCCCTGCGCAAGATGACCGGCACCAT
CAGCAAGACCCACACCTGTGTGGTCTTCATCAACCAGATCCGCATGAAGATCGGTGTGATGTTCGGCAACCCCGAGACCA
CCACCGGCGGGAACGCGCTCAAGTTCTACGCCTCCGTGCGCCTGGATGTGCGCAGCATCCAAAGCATCAAGGGCAACACC
GGCGATCCCCTGGTGGCCACCAAGGACGAGGATTCCTCCGTCATCGGCAAGAAGACCAAGGTCAAGGTCGTGAAGAACAA
GGTCGCGCCGCCCCTCAAGGTCGCCACCTTCGACATCATGTATGGCGAAGGCATCAGCCGCACCAGCGAGCTGGTGGAGC
TGGGCACCCAGCTGGAGATCATCCAGAAGAGCGGCTCCTGGTACAGCTACAAGGACAGCCGCCTGGGCCAGGGCGCCGAG
AACGTGAAGAAGCTCTTCAACGACAATCCGGAATTGGCGGACGAGGTGGAAGGCCTCATCCGCGAGCGCCTCGGCATGAA
GGGTGCCGTGGAGGTTTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(11-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.45

97.159

0.616
  recA Neisseria gonorrhoeae strain FA1090

63.881

95.17

0.608
  recA Neisseria gonorrhoeae MS11

63.881

95.17

0.608
  recA Neisseria gonorrhoeae MS11

63.881

95.17

0.608
  recA Ralstonia pseudosolanacearum GMI1000

64.832

92.898

0.602
  recA Glaesserella parasuis strain SC1401

62.353

96.591

0.602
  recA Streptococcus pneumoniae Rx1

60.58

98.011

0.594
  recA Streptococcus pneumoniae D39

60.58

98.011

0.594
  recA Streptococcus pneumoniae R6

60.58

98.011

0.594
  recA Streptococcus pneumoniae TIGR4

60.58

98.011

0.594
  recA Streptococcus mitis NCTC 12261

61.652

96.307

0.594
  recA Acinetobacter baumannii D1279779

59.599

99.148

0.591
  recA Streptococcus pyogenes NZ131

61.357

96.307

0.591
  recA Streptococcus mitis SK321

61.357

96.307

0.591
  recA Bacillus subtilis subsp. subtilis str. 168

61.062

96.307

0.588
  recA Streptococcus mutans UA159

60.882

96.591

0.588
  recA Acinetobacter baylyi ADP1

60.058

97.443

0.585
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.13

98.011

0.58
  recA Latilactobacillus sakei subsp. sakei 23K

59.531

96.875

0.577
  recA Pseudomonas stutzeri DSM 10701

59.467

96.023

0.571
  recA Helicobacter pylori 26695

58.824

96.591

0.568
  recA Helicobacter pylori strain NCTC11637

58.529

96.591

0.565
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.58

96.023

0.563
  recA Vibrio cholerae strain A1552

58.58

96.023

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.225

98.295

0.562
  recA Lactococcus lactis subsp. cremoris KW2

58.112

96.307

0.56