Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   Q8X41_RS17810 Genome accession   NZ_CP132291
Coordinates   3669111..3670157 (+) Length   348 a.a.
NCBI ID   WP_397537580.1    Uniprot ID   -
Organism   Rummeliibacillus pycnus strain X33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3664111..3675157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8X41_RS17785 - 3664677..3664934 (+) 258 WP_397537575.1 DUF3243 domain-containing protein -
  Q8X41_RS17790 - 3665158..3665958 (+) 801 WP_397537576.1 DUF3388 domain-containing protein -
  Q8X41_RS17795 - 3665976..3666899 (+) 924 WP_397537577.1 RodZ domain-containing protein -
  Q8X41_RS17800 pgsA 3666947..3667525 (+) 579 WP_397537578.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  Q8X41_RS17805 cinA 3667657..3668913 (+) 1257 WP_397537579.1 competence/damage-inducible protein A Machinery gene
  Q8X41_RS17810 recA 3669111..3670157 (+) 1047 WP_397537580.1 recombinase RecA Machinery gene
  Q8X41_RS17815 rny 3670365..3671918 (+) 1554 WP_397540300.1 ribonuclease Y -
  Q8X41_RS17820 - 3672034..3672831 (+) 798 WP_397537581.1 TIGR00282 family metallophosphoesterase -
  Q8X41_RS17825 - 3672919..3673185 (+) 267 WP_102692595.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37647.62 Da        Isoelectric Point: 4.6047

>NTDB_id=868036 Q8X41_RS17810 WP_397537580.1 3669111..3670157(+) (recA) [Rummeliibacillus pycnus strain X33]
MDERKAALDMALKQIEKQFGKGSVMKLGEQADRKVSTSSSGSLALDTALGVGGYPRGRVIEIYGPESSGKTTVALHAIAE
VQANGGQAAFIDAEHALDPVYASKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGIINKSNTIAIFINQIREKIGVMFGNPETTPGGRALKFYASVRLEVRRAETIKQGNDMVGNRT
KIKVVKNKVAPPFKTAEVDIMYGEGISKEGEIIDIGVEKDIVQKSGSWYAYEDERLGQGRENAKQFLKENPEISDEIAQK
IRVASGISADEYDVPEESEENPTLFEEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=868036 Q8X41_RS17810 WP_397537580.1 3669111..3670157(+) (recA) [Rummeliibacillus pycnus strain X33]
TTGGACGAACGTAAAGCGGCATTAGATATGGCTCTTAAACAAATTGAAAAGCAATTTGGTAAAGGGTCTGTTATGAAATT
AGGAGAACAGGCAGACCGCAAAGTTTCTACATCTTCAAGCGGCTCTTTAGCACTTGATACAGCACTTGGAGTTGGTGGTT
ACCCTAGAGGTCGTGTCATTGAAATATATGGACCAGAAAGTTCTGGTAAAACTACTGTAGCACTACATGCTATCGCAGAA
GTACAAGCAAATGGAGGTCAAGCAGCATTTATTGATGCTGAACATGCTCTCGATCCTGTTTATGCTTCTAAACTTGGCGT
TAATATCGACGAATTGTTACTATCTCAACCAGATACTGGTGAACAAGCTTTAGAAATTGCAGAAGCACTTGTAAGAAGTG
GCGCAATTGATATTATTGTTATAGACTCTGTAGCAGCACTCGTACCAAAAGCCGAAATCGAAGGCGAAATGGGCGACTCA
CATGTAGGTCTTCAAGCACGCTTAATGTCACAGGCATTACGTAAACTATCTGGTATTATTAATAAGTCTAATACCATTGC
AATCTTCATCAACCAAATTCGTGAAAAAATTGGCGTTATGTTCGGTAATCCTGAAACAACACCAGGTGGACGTGCACTTA
AATTCTATGCATCAGTCCGTTTAGAAGTACGCCGAGCAGAAACGATTAAACAAGGTAATGATATGGTCGGTAACCGTACG
AAAATTAAGGTTGTGAAAAACAAAGTAGCACCGCCGTTCAAAACAGCAGAAGTTGATATCATGTATGGTGAAGGGATTTC
AAAAGAAGGAGAAATTATCGATATCGGTGTTGAAAAAGATATCGTTCAAAAAAGTGGTTCTTGGTATGCCTATGAAGATG
AACGTCTAGGTCAAGGACGCGAAAATGCAAAACAATTCCTAAAAGAAAACCCTGAAATTAGTGATGAAATTGCTCAAAAA
ATTCGTGTTGCTTCAGGCATTTCTGCAGATGAGTATGATGTACCAGAAGAAAGCGAAGAAAATCCAACACTATTTGAAGA
AGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.015

93.966

0.799
  recA Latilactobacillus sakei subsp. sakei 23K

74.64

99.713

0.744
  recA Streptococcus pneumoniae Rx1

68.805

98.563

0.678
  recA Streptococcus pneumoniae D39

68.805

98.563

0.678
  recA Streptococcus pneumoniae R6

68.805

98.563

0.678
  recA Streptococcus pneumoniae TIGR4

68.805

98.563

0.678
  recA Streptococcus mutans UA159

67.723

99.713

0.675
  recA Streptococcus mitis NCTC 12261

70.517

94.54

0.667
  recA Streptococcus mitis SK321

69.909

94.54

0.661
  recA Streptococcus pyogenes NZ131

69.909

94.54

0.661
  recA Lactococcus lactis subsp. cremoris KW2

69.277

95.402

0.661
  recA Neisseria gonorrhoeae strain FA1090

67.278

93.966

0.632
  recA Neisseria gonorrhoeae MS11

67.278

93.966

0.632
  recA Neisseria gonorrhoeae MS11

67.278

93.966

0.632
  recA Ralstonia pseudosolanacearum GMI1000

66.768

94.253

0.629
  recA Acinetobacter baumannii D1279779

62.644

100

0.626
  recA Acinetobacter baylyi ADP1

62.356

100

0.624
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.873

92.816

0.621
  recA Vibrio cholerae strain A1552

66.873

92.816

0.621
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.443

93.966

0.615
  recA Glaesserella parasuis strain SC1401

60.684

100

0.612
  recA Helicobacter pylori strain NCTC11637

62.647

97.701

0.612
  recA Helicobacter pylori 26695

62.647

97.701

0.612
  recA Pseudomonas stutzeri DSM 10701

65.635

92.816

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

93.966

0.598
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.848

92.816

0.583