Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   O5O45_RS01775 Genome accession   NZ_CP132203
Coordinates   354830..355867 (+) Length   345 a.a.
NCBI ID   WP_305903591.1    Uniprot ID   -
Organism   Hahella sp. HNIBRBA332     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 349830..360867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O5O45_RS01750 (O5O45_01750) rnhB 349894..350502 (+) 609 WP_305903587.1 ribonuclease HII -
  O5O45_RS01755 (O5O45_01755) - 350504..350977 (+) 474 WP_305903588.1 DUF4124 domain-containing protein -
  O5O45_RS01760 (O5O45_01760) fdxA 351042..351365 (-) 324 WP_011398974.1 ferredoxin FdxA -
  O5O45_RS01765 (O5O45_01765) mutS 351497..354079 (-) 2583 WP_305903589.1 DNA mismatch repair protein MutS -
  O5O45_RS01770 (O5O45_01770) - 354222..354713 (+) 492 WP_305903590.1 CinA family protein -
  O5O45_RS01775 (O5O45_01775) recA 354830..355867 (+) 1038 WP_305903591.1 recombinase RecA Machinery gene
  O5O45_RS01780 (O5O45_01780) - 356013..356495 (-) 483 WP_305903592.1 fibronectin type III domain-containing protein -
  O5O45_RS01785 (O5O45_01785) - 356807..356986 (+) 180 WP_216734988.1 hypothetical protein -
  O5O45_RS01790 (O5O45_01790) - 357001..357384 (-) 384 WP_305903593.1 SirB2 family protein -
  O5O45_RS01795 (O5O45_01795) moaE 357537..358010 (+) 474 WP_305903594.1 molybdopterin synthase catalytic subunit MoaE -
  O5O45_RS01800 (O5O45_01800) mobA 358053..358652 (-) 600 WP_305903595.1 molybdenum cofactor guanylyltransferase MobA -
  O5O45_RS01805 (O5O45_01805) - 358649..359059 (-) 411 WP_305903596.1 PilZ domain-containing protein -
  O5O45_RS01810 (O5O45_01810) - 359214..359498 (-) 285 WP_305903597.1 hypothetical protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37438.07 Da        Isoelectric Point: 5.8973

>NTDB_id=867633 O5O45_RS01775 WP_305903591.1 354830..355867(+) (recA) [Hahella sp. HNIBRBA332]
MDDNRKKALTAALSQIERQFGKGAVMRMGEQPREIIPSVSTGSLGLDIALGIGGLPYGRIVEIYGPESSGKTTLTLQVIA
EAQRQGKTCAFVDAEHALDPIYAEKLGVNIDQLLVSQPDTGEQALEIADMLVRSGAVDVIIIDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTGSVKQANCLMIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGSVKEGEEVVGNE
TRVKVVKNKVSPPFRQADFQIMYGRGIYRTGEIIDLGVKEGFVDKSGAWYSYKGDKIGQGKANSSRYLEEHPEIAVEIET
AIRDKLMPKMPAKEKEAPVAPVEAE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=867633 O5O45_RS01775 WP_305903591.1 354830..355867(+) (recA) [Hahella sp. HNIBRBA332]
ATGGATGACAATCGTAAGAAGGCGTTGACGGCCGCTTTATCACAAATTGAGCGTCAGTTTGGTAAAGGCGCGGTCATGCG
GATGGGGGAGCAGCCGAGAGAAATTATTCCTTCCGTCTCTACTGGCTCGCTTGGACTGGATATCGCTCTTGGCATCGGCG
GTTTGCCATATGGACGTATTGTCGAGATCTATGGACCGGAGAGTTCCGGTAAAACCACTCTGACTCTGCAGGTGATTGCA
GAAGCGCAGCGCCAGGGCAAAACCTGTGCGTTCGTTGATGCGGAGCATGCGCTGGACCCTATTTACGCAGAGAAGCTTGG
CGTTAATATCGATCAACTGCTGGTTTCCCAGCCCGACACGGGCGAACAGGCTCTGGAAATCGCCGATATGCTGGTTCGCT
CCGGCGCGGTCGATGTCATCATTATCGACTCCGTTGCTGCGTTAACGCCGAAGGCGGAAATCGAGGGCGAAATGGGAGAT
TCCCACGTTGGTCTGCAAGCCCGTTTGATGTCACAAGCTCTGAGAAAGTTGACCGGTAGTGTTAAGCAGGCGAATTGCTT
GATGATCTTCATTAACCAGATTCGTATGAAAATCGGTGTAATGTTCGGGTCGCCAGAGACCACTACTGGCGGTAACGCGC
TTAAGTTCTACGCTTCCGTTCGTCTTGATATTCGCCGCGTTGGCTCCGTGAAAGAAGGAGAGGAAGTCGTTGGTAACGAG
ACTCGCGTGAAAGTGGTGAAAAACAAAGTGTCGCCGCCTTTTAGACAAGCGGATTTTCAGATCATGTATGGCCGCGGTAT
TTACCGCACGGGAGAGATTATCGATCTGGGTGTGAAAGAAGGCTTTGTTGATAAGTCTGGCGCTTGGTATAGCTATAAAG
GCGACAAGATTGGTCAAGGTAAAGCCAATTCATCCCGGTATCTGGAAGAGCATCCTGAAATTGCGGTAGAGATCGAAACC
GCCATCAGAGATAAATTGATGCCAAAGATGCCAGCAAAAGAGAAAGAAGCGCCTGTCGCCCCAGTTGAGGCTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

81.176

98.551

0.8
  recA Vibrio cholerae strain A1552

74.924

94.783

0.71
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.924

94.783

0.71
  recA Acinetobacter baylyi ADP1

74.468

95.362

0.71
  recA Acinetobacter baumannii D1279779

73.7

94.783

0.699
  recA Ralstonia pseudosolanacearum GMI1000

70.746

97.101

0.687
  recA Glaesserella parasuis strain SC1401

72.222

93.913

0.678
  recA Neisseria gonorrhoeae MS11

70.988

93.913

0.667
  recA Neisseria gonorrhoeae MS11

70.988

93.913

0.667
  recA Neisseria gonorrhoeae strain FA1090

70.988

93.913

0.667
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.972

94.783

0.635
  recA Helicobacter pylori 26695

60.87

100

0.609
  recA Helicobacter pylori strain NCTC11637

60.29

100

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.721

97.681

0.603
  recA Bacillus subtilis subsp. subtilis str. 168

63.863

93.043

0.594
  recA Streptococcus mutans UA159

57.514

100

0.577
  recA Streptococcus pneumoniae D39

60.123

94.493

0.568
  recA Streptococcus pneumoniae Rx1

60.123

94.493

0.568
  recA Streptococcus pneumoniae R6

60.123

94.493

0.568
  recA Streptococcus pneumoniae TIGR4

60.123

94.493

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

61.059

93.043

0.568
  recA Streptococcus pyogenes NZ131

59.146

95.072

0.562
  recA Streptococcus mitis NCTC 12261

59.443

93.623

0.557
  recA Lactococcus lactis subsp. cremoris KW2

59.133

93.623

0.554
  recA Streptococcus mitis SK321

59.133

93.623

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.447

95.362

0.548