Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   Q9G97_RS10590 Genome accession   NZ_CP132194
Coordinates   2516462..2517529 (+) Length   355 a.a.
NCBI ID   WP_305898789.1    Uniprot ID   -
Organism   Psychrobacter sp. M13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2511462..2522529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9G97_RS10575 (Q9G97_10575) - 2511550..2513439 (+) 1890 WP_305898786.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  Q9G97_RS10580 (Q9G97_10580) - 2513557..2514486 (-) 930 WP_305898787.1 DUF2628 domain-containing protein -
  Q9G97_RS10585 (Q9G97_10585) trmB 2514651..2515511 (+) 861 WP_305898788.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  Q9G97_RS10590 (Q9G97_10590) recA 2516462..2517529 (+) 1068 WP_305898789.1 recombinase RecA Machinery gene
  Q9G97_RS10595 (Q9G97_10595) - 2517565..2518671 (+) 1107 WP_305898790.1 regulatory protein RecX -
  Q9G97_RS10600 (Q9G97_10600) - 2518707..2520164 (-) 1458 WP_305898791.1 anion permease -
  Q9G97_RS10605 (Q9G97_10605) - 2520388..2521113 (-) 726 WP_305898792.1 YidB family protein -
  Q9G97_RS10610 (Q9G97_10610) - 2521202..2521651 (-) 450 WP_305898793.1 hypothetical protein -
  Q9G97_RS10615 (Q9G97_10615) - 2521754..2522053 (-) 300 WP_305898794.1 succinate dehydrogenase assembly factor 2 -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37968.24 Da        Isoelectric Point: 4.7988

>NTDB_id=867544 Q9G97_RS10590 WP_305898789.1 2516462..2517529(+) (recA) [Psychrobacter sp. M13]
MDENKAKALKAALGQIEKQFGKNTIMHLGDDSAALNNVDVVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQA
IAQCQKQGGTCAFIDAEHALDPVYARKLGINTDDLLISQPDNGEQALEITDMLVRSGAVDMIVIDSVAALTPRAEIEGEM
GDSHMGLQARLMSQALRKITGNAKRSNCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRIGAVKNGDEIIG
NQTRVKVIKNKMAPPFRQAEFEITYGEGTNHLAEVIDLGVDIGAVGKAGSWYSYGDEKIGQGKANSVIYLKENPAIAEEI
EAKIRAEKLGTVNENAKSDAEEIEADVNAESEAPL

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=867544 Q9G97_RS10590 WP_305898789.1 2516462..2517529(+) (recA) [Psychrobacter sp. M13]
ATGGACGAGAATAAAGCCAAAGCACTCAAAGCCGCACTAGGTCAGATCGAAAAGCAGTTTGGTAAAAACACTATCATGCA
TTTAGGTGATGATTCAGCAGCGCTTAATAATGTTGACGTGGTCTCTACAGGGTCGTTAGGCTTAGATATCGCACTAGGTA
TCGGCGGTCTGCCTAAAGGTCGTATTGTGGAGATTTATGGCCCTGAAAGCTCTGGTAAAACGACGATGACTTTGCAGGCT
ATTGCACAGTGTCAAAAACAAGGTGGTACTTGTGCCTTTATCGATGCTGAACACGCCCTCGACCCTGTCTATGCACGTAA
GCTAGGTATCAATACTGATGATCTACTTATTTCGCAGCCCGATAACGGTGAGCAAGCCCTAGAGATTACTGATATGCTAG
TGCGCTCAGGTGCTGTCGATATGATCGTTATTGACTCTGTGGCAGCGCTCACACCGCGTGCTGAGATCGAAGGCGAGATG
GGTGATTCGCACATGGGTTTACAAGCCCGTCTGATGAGTCAAGCCCTACGTAAGATTACGGGTAATGCTAAGCGCTCTAA
CTGCATGGTGGTCTTTATTAACCAAATTCGTATGAAAATTGGCGTCATGTTCGGTAGTCCTGAGACCACTACTGGTGGTA
ATGCGCTAAAATTCTATGCTTCGGTACGGATGGATATTCGCCGTATTGGTGCAGTCAAAAACGGTGATGAAATCATTGGT
AATCAGACGCGAGTCAAAGTTATCAAAAACAAGATGGCACCACCCTTTCGTCAAGCAGAATTTGAGATTACCTATGGCGA
AGGTACGAATCACTTAGCAGAAGTCATCGACTTGGGCGTTGATATCGGTGCCGTAGGCAAAGCGGGCTCTTGGTATAGTT
ATGGCGATGAAAAAATCGGTCAAGGTAAGGCCAATTCGGTAATTTATCTAAAAGAGAATCCTGCTATTGCTGAAGAAATT
GAAGCCAAAATTCGCGCTGAAAAATTAGGTACGGTTAACGAAAATGCTAAGTCAGATGCTGAAGAAATTGAGGCGGATGT
AAACGCTGAATCAGAAGCACCTTTGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

75.783

98.873

0.749
  recA Acinetobacter baylyi ADP1

76.149

98.028

0.746
  recA Pseudomonas stutzeri DSM 10701

72

98.592

0.71
  recA Glaesserella parasuis strain SC1401

68.571

98.592

0.676
  recA Vibrio cholerae strain A1552

72

91.549

0.659
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72

91.549

0.659
  recA Ralstonia pseudosolanacearum GMI1000

69.789

93.239

0.651
  recA Neisseria gonorrhoeae strain FA1090

70.245

91.831

0.645
  recA Neisseria gonorrhoeae MS11

70.245

91.831

0.645
  recA Neisseria gonorrhoeae MS11

70.245

91.831

0.645
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.031

91.831

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.363

93.803

0.594
  recA Helicobacter pylori strain NCTC11637

61.791

94.366

0.583
  recA Helicobacter pylori 26695

61.493

94.366

0.58
  recA Streptococcus pneumoniae D39

56.338

100

0.563
  recA Streptococcus pneumoniae R6

56.338

100

0.563
  recA Streptococcus pneumoniae TIGR4

56.338

100

0.563
  recA Streptococcus pneumoniae Rx1

56.338

100

0.563
  recA Streptococcus mutans UA159

55.899

100

0.561
  recA Bacillus subtilis subsp. subtilis str. 168

61.801

90.704

0.561
  recA Streptococcus mitis NCTC 12261

56.056

100

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.615

91.549

0.555
  recA Streptococcus mitis SK321

56.812

97.183

0.552
  recA Latilactobacillus sakei subsp. sakei 23K

60

91.549

0.549
  recA Lactococcus lactis subsp. cremoris KW2

58.025

91.268

0.53
  recA Streptococcus pyogenes NZ131

57.492

92.113

0.53