Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | CDIFMA1_RS06420 | Genome accession | NZ_CP132139 |
| Coordinates | 1343570..1344616 (+) | Length | 348 a.a. |
| NCBI ID | WP_003419530.1 | Uniprot ID | A0AAX3GVV5 |
| Organism | Clostridioides difficile strain MA_1 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1338780..1389410 | 1343570..1344616 | within | 0 |
Gene organization within MGE regions
Location: 1338780..1389410
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIFMA1_RS06405 (CDIFMA1_12750) | mnmH | 1340388..1341446 (+) | 1059 | WP_003419524.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| CDIFMA1_RS06410 (CDIFMA1_12760) | rimO | 1341440..1342774 (+) | 1335 | WP_003419527.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| CDIFMA1_RS06415 (CDIFMA1_12770) | pgsA | 1342761..1343303 (+) | 543 | WP_009905407.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| CDIFMA1_RS06420 (CDIFMA1_12780) | recA | 1343570..1344616 (+) | 1047 | WP_003419530.1 | recombinase RecA | Machinery gene |
| CDIFMA1_RS06425 (CDIFMA1_12790) | rny | 1344792..1346333 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| CDIFMA1_RS06430 (CDIFMA1_12800) | - | 1346643..1348979 (+) | 2337 | WP_003419542.1 | diguanylate cyclase | - |
| CDIFMA1_RS06435 | - | 1349783..1349875 (+) | 93 | Protein_1176 | transposase | - |
| CDIFMA1_RS06440 (CDIFMA1_12820) | tnpB | 1349882..1350999 (+) | 1118 | Protein_1177 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| CDIFMA1_RS06445 (CDIFMA1_12830) | - | 1351331..1353112 (+) | 1782 | WP_003419546.1 | UvrD-helicase domain-containing protein | - |
| CDIFMA1_RS06450 (CDIFMA1_12840) | lepB | 1353192..1353722 (-) | 531 | WP_009905409.1 | signal peptidase I | - |
| CDIFMA1_RS06455 (CDIFMA1_12850) | - | 1353762..1354586 (-) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| CDIFMA1_RS06460 (CDIFMA1_12860) | - | 1354843..1355754 (+) | 912 | WP_022615208.1 | tyrosine-type recombinase/integrase | - |
| CDIFMA1_RS06465 (CDIFMA1_12870) | purB | 1355893..1357338 (+) | 1446 | WP_003419557.1 | adenylosuccinate lyase | - |
| CDIFMA1_RS06470 (CDIFMA1_12880) | - | 1357639..1358091 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CDIFMA1_RS06475 (CDIFMA1_12890) | - | 1358310..1359506 (-) | 1197 | WP_003419570.1 | pyridoxal phosphate-dependent aminotransferase | - |
| CDIFMA1_RS06480 (CDIFMA1_12900) | galT | 1359891..1360841 (+) | 951 | WP_003419573.1 | galactose-1-phosphate uridylyltransferase | - |
| CDIFMA1_RS06485 (CDIFMA1_12910) | - | 1360962..1361714 (+) | 753 | WP_003419575.1 | exodeoxyribonuclease III | - |
| CDIFMA1_RS06490 (CDIFMA1_12920) | - | 1361806..1362582 (-) | 777 | WP_003419578.1 | 3'-5' exonuclease | - |
| CDIFMA1_RS06495 (CDIFMA1_12930) | - | 1362897..1364795 (+) | 1899 | WP_003419583.1 | glutamine synthetase | - |
| CDIFMA1_RS06500 (CDIFMA1_12940) | - | 1364923..1366044 (-) | 1122 | WP_003419591.1 | MGDG synthase family glycosyltransferase | - |
| CDIFMA1_RS06505 (CDIFMA1_12950) | - | 1366243..1366575 (+) | 333 | WP_009905416.1 | PadR family transcriptional regulator | - |
| CDIFMA1_RS06510 (CDIFMA1_12960) | - | 1366562..1367620 (+) | 1059 | WP_003419595.1 | DUF1700 domain-containing protein | - |
| CDIFMA1_RS06515 (CDIFMA1_12970) | - | 1367613..1368683 (+) | 1071 | WP_003419596.1 | DUF4097 family beta strand repeat-containing protein | - |
| CDIFMA1_RS06520 (CDIFMA1_12980) | - | 1368785..1369321 (+) | 537 | WP_003419598.1 | hypothetical protein | - |
| CDIFMA1_RS06525 (CDIFMA1_12990) | - | 1369441..1370148 (+) | 708 | WP_009905418.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| CDIFMA1_RS06530 (CDIFMA1_13000) | - | 1370150..1370869 (+) | 720 | WP_003419603.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| CDIFMA1_RS06535 (CDIFMA1_13010) | - | 1370871..1371641 (+) | 771 | WP_003419609.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| CDIFMA1_RS06540 (CDIFMA1_13020) | - | 1371775..1373166 (+) | 1392 | WP_029158131.1 | sensor histidine kinase | - |
| CDIFMA1_RS06545 (CDIFMA1_13030) | - | 1373242..1374063 (-) | 822 | WP_003419615.1 | pyridoxamine kinase | - |
| CDIFMA1_RS06550 (CDIFMA1_13040) | - | 1374314..1375468 (+) | 1155 | WP_009905420.1 | amidase domain-containing protein | - |
| CDIFMA1_RS06555 (CDIFMA1_13050) | - | 1375651..1375851 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| CDIFMA1_RS06560 (CDIFMA1_13060) | - | 1376272..1376700 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| CDIFMA1_RS06565 (CDIFMA1_13070) | - | 1376843..1377598 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| CDIFMA1_RS06570 (CDIFMA1_13090) | - | 1378299..1378805 (-) | 507 | WP_003419636.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIFMA1_RS06575 (CDIFMA1_13100) | - | 1378887..1379207 (-) | 321 | WP_003419639.1 | XRE family transcriptional regulator | - |
| CDIFMA1_RS06580 (CDIFMA1_13110) | - | 1379376..1379573 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| CDIFMA1_RS06585 (CDIFMA1_13120) | - | 1379677..1380117 (+) | 441 | WP_003419643.1 | hypothetical protein | - |
| CDIFMA1_RS06590 (CDIFMA1_13130) | - | 1380366..1380809 (+) | 444 | WP_003419644.1 | phage tail terminator family protein | - |
| CDIFMA1_RS06595 (CDIFMA1_13140) | - | 1380814..1381878 (+) | 1065 | WP_003419645.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| CDIFMA1_RS06600 (CDIFMA1_13150) | - | 1381892..1382320 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| CDIFMA1_RS06605 (CDIFMA1_13160) | - | 1382434..1382880 (+) | 447 | WP_003419647.1 | phage tail assembly chaperone | - |
| CDIFMA1_RS06610 | - | 1382907..1383074 (+) | 168 | WP_003419648.1 | hypothetical protein | - |
| CDIFMA1_RS06615 (CDIFMA1_13170) | - | 1383074..1385527 (+) | 2454 | WP_003419649.1 | hypothetical protein | - |
| CDIFMA1_RS06620 (CDIFMA1_13180) | - | 1385527..1385949 (+) | 423 | WP_003419651.1 | phage baseplate protein | - |
| CDIFMA1_RS06625 (CDIFMA1_13190) | - | 1386231..1387760 (+) | 1530 | WP_003419653.1 | NlpC/P60 family protein | - |
| CDIFMA1_RS06630 (CDIFMA1_13200) | - | 1387776..1388102 (+) | 327 | WP_003419655.1 | DUF2577 family protein | - |
| CDIFMA1_RS06635 (CDIFMA1_13210) | - | 1388102..1388530 (+) | 429 | WP_003419656.1 | DUF2634 domain-containing protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37387.68 Da Isoelectric Point: 4.8236
>NTDB_id=867252 CDIFMA1_RS06420 WP_003419530.1 1343570..1344616(+) (recA) [Clostridioides difficile strain MA_1]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=867252 CDIFMA1_RS06420 WP_003419530.1 1343570..1344616(+) (recA) [Clostridioides difficile strain MA_1]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.