Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NGH78_RS06265 Genome accession   NZ_AP024620
Coordinates   1252658..1253704 (+) Length   348 a.a.
NCBI ID   WP_109206143.1    Uniprot ID   -
Organism   Moorella sp. Hama-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1247658..1258704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGH78_RS06245 (hamaS1_12320) pgsA 1249370..1249888 (+) 519 WP_109206147.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NGH78_RS06250 (hamaS1_12330) - 1249982..1250527 (+) 546 WP_109206146.1 hypothetical protein -
  NGH78_RS06255 (hamaS1_12340) - 1250520..1252004 (+) 1485 WP_109206145.1 AAA family ATPase -
  NGH78_RS06260 (hamaS1_12350) thpR 1252073..1252630 (+) 558 WP_109206144.1 RNA 2',3'-cyclic phosphodiesterase -
  NGH78_RS06265 (hamaS1_12360) recA 1252658..1253704 (+) 1047 WP_109206143.1 recombinase RecA Machinery gene
  NGH78_RS06270 (hamaS1_12370) - 1253682..1254185 (+) 504 WP_109206142.1 regulatory protein RecX -
  NGH78_RS06275 (hamaS1_12380) rny 1254442..1255974 (+) 1533 WP_109206141.1 ribonuclease Y -
  NGH78_RS06280 (hamaS1_12390) - 1256143..1256661 (+) 519 WP_109206140.1 hypothetical protein -
  NGH78_RS06285 (hamaS1_12400) - 1256718..1257503 (+) 786 WP_109206139.1 TIGR00282 family metallophosphoesterase -
  NGH78_RS06290 (hamaS1_12410) - 1257678..1257995 (+) 318 WP_109206138.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37258.72 Da        Isoelectric Point: 6.6214

>NTDB_id=86721 NGH78_RS06265 WP_109206143.1 1252658..1253704(+) (recA) [Moorella sp. Hama-1]
MKRVVLTEKQRALENALSQIERHFGKGSIMRLGETGARLNVDAIATGALPLDLALGVGGLPRGRVVEIFGPESSGKTTVA
LHVIAEAQRAGGTAAFIDAEHALDPVYAHNMGVDTDNLLVSQPDTGEQALEIAEALVRSGAIDVIVIDSVAALVPRAELE
GEMGDAHVGLQARLMSQALRKLAGIISKSRTVAIFINQLREKVGVLFGSPETTPGGRALKFYASVRLDVRKIEQLKAGTE
IIGSRTRVKVVKNKVAPPFRQAEFDIIYGRGIDREGCLLDMGVDLDIVKKSGAWYSLGEDRLGQGREAAKDFLKEHADLA
NAIEAQIREKVGLNNHPAAKEDATPADV

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=86721 NGH78_RS06265 WP_109206143.1 1252658..1253704(+) (recA) [Moorella sp. Hama-1]
ATTAAACGCGTGGTTTTAACTGAAAAACAGCGCGCCCTGGAAAACGCCCTGTCCCAGATTGAGCGGCACTTCGGTAAGGG
TTCCATTATGCGCCTGGGCGAAACCGGCGCCCGTCTCAATGTCGATGCCATCGCCACCGGGGCCCTGCCCCTGGATCTGG
CCCTGGGCGTAGGCGGGCTGCCCCGGGGCCGGGTAGTAGAGATCTTTGGCCCGGAATCCTCCGGTAAGACTACCGTAGCC
CTGCATGTTATCGCCGAGGCCCAGCGGGCCGGTGGCACGGCGGCCTTTATCGATGCCGAGCATGCCCTGGATCCGGTTTA
TGCCCATAACATGGGCGTGGATACAGATAACCTGCTGGTGTCCCAACCCGACACCGGCGAACAGGCCCTGGAAATAGCCG
AAGCCCTGGTCCGCAGCGGGGCTATTGACGTGATAGTTATTGACTCGGTAGCCGCCCTGGTGCCCCGGGCCGAACTGGAA
GGGGAGATGGGCGACGCCCATGTAGGTTTACAGGCCCGGTTAATGTCCCAGGCCCTGCGTAAACTGGCGGGGATCATCTC
TAAATCCCGCACTGTAGCCATTTTTATTAACCAGTTGCGGGAAAAGGTAGGGGTCCTCTTCGGCAGTCCCGAGACCACCC
CCGGCGGCCGGGCCTTGAAATTCTATGCCTCCGTGCGCCTGGATGTCCGCAAGATTGAACAGTTAAAGGCCGGTACAGAG
ATAATCGGTAGCCGTACCCGGGTCAAGGTGGTAAAGAATAAAGTAGCGCCTCCCTTCCGCCAGGCTGAGTTTGATATTAT
CTATGGCCGGGGGATTGACAGAGAGGGCTGCCTCCTGGATATGGGGGTTGACCTGGATATCGTCAAAAAGAGCGGCGCCT
GGTATTCCCTGGGCGAAGATCGCCTGGGACAGGGACGCGAGGCCGCCAAGGATTTCCTCAAGGAGCACGCCGATCTGGCC
AACGCCATTGAGGCCCAGATCCGGGAAAAGGTTGGGTTGAATAATCATCCGGCTGCTAAAGAAGATGCCACCCCGGCCGA
CGTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(11-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

68.675

95.402

0.655
  recA Latilactobacillus sakei subsp. sakei 23K

65.152

94.828

0.618
  recA Pseudomonas stutzeri DSM 10701

62.908

96.839

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.09

96.264

0.598
  recA Acinetobacter baylyi ADP1

64.087

92.816

0.595
  recA Glaesserella parasuis strain SC1401

59.654

99.713

0.595
  recA Ralstonia pseudosolanacearum GMI1000

65.397

90.517

0.592
  recA Streptococcus pneumoniae TIGR4

62.121

94.828

0.589
  recA Streptococcus pneumoniae Rx1

62.121

94.828

0.589
  recA Streptococcus pneumoniae D39

62.121

94.828

0.589
  recA Streptococcus pneumoniae R6

62.121

94.828

0.589
  recA Streptococcus mitis SK321

60.355

97.126

0.586
  recA Neisseria gonorrhoeae MS11

62.006

94.54

0.586
  recA Neisseria gonorrhoeae MS11

62.006

94.54

0.586
  recA Neisseria gonorrhoeae strain FA1090

62.006

94.54

0.586
  recA Helicobacter pylori strain NCTC11637

62.195

94.253

0.586
  recA Vibrio cholerae strain A1552

63.24

92.241

0.583
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.24

92.241

0.583
  recA Lactococcus lactis subsp. cremoris KW2

61.515

94.828

0.583
  recA Helicobacter pylori 26695

61.89

94.253

0.583
  recA Acinetobacter baumannii D1279779

62.848

92.816

0.583
  recA Streptococcus pyogenes NZ131

61.212

94.828

0.58
  recA Streptococcus mitis NCTC 12261

61.212

94.828

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.846

93.391

0.578
  recA Streptococcus mutans UA159

60.606

94.828

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.215

95.115

0.563

Multiple sequence alignment