Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | Q7W71_RS18485 | Genome accession | NZ_CP131924 |
| Coordinates | 3662699..3663730 (-) | Length | 343 a.a. |
| NCBI ID | WP_002014599.1 | Uniprot ID | J8B5M7 |
| Organism | Bacillus mycoides strain PAMC 29627 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3656311..3749293 | 3662699..3663730 | within | 0 |
Gene organization within MGE regions
Location: 3656311..3749293
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q7W71_RS18465 | - | 3658283..3659206 (-) | 924 | WP_002128703.1 | dipeptidase | - |
| Q7W71_RS18470 | spoVS | 3659266..3659526 (-) | 261 | WP_000404341.1 | stage V sporulation protein SpoVS | - |
| Q7W71_RS18475 | - | 3659676..3660470 (-) | 795 | WP_002014601.1 | TIGR00282 family metallophosphoesterase | - |
| Q7W71_RS18480 | rny | 3660650..3662215 (-) | 1566 | WP_002014600.1 | ribonuclease Y | - |
| Q7W71_RS18485 | recA | 3662699..3663730 (-) | 1032 | WP_002014599.1 | recombinase RecA | Machinery gene |
| Q7W71_RS18490 | cinA | 3663873..3665111 (-) | 1239 | WP_002014598.1 | competence/damage-inducible protein A | Machinery gene |
| Q7W71_RS18495 | pgsA | 3665132..3665710 (-) | 579 | WP_002014596.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| Q7W71_RS18500 | - | 3665774..3666685 (-) | 912 | WP_002142844.1 | helix-turn-helix domain-containing protein | - |
| Q7W71_RS18505 | - | 3666707..3667492 (-) | 786 | WP_000574107.1 | DUF3388 domain-containing protein | - |
| Q7W71_RS18510 | - | 3667632..3667880 (-) | 249 | WP_000114449.1 | DUF3243 domain-containing protein | - |
| Q7W71_RS18515 | - | 3667957..3668670 (-) | 714 | WP_002014593.1 | SDR family oxidoreductase | - |
| Q7W71_RS18520 | - | 3668788..3670074 (-) | 1287 | WP_002014592.1 | pitrilysin family protein | - |
| Q7W71_RS18525 | - | 3670075..3671349 (-) | 1275 | WP_002014591.1 | pitrilysin family protein | - |
| Q7W71_RS18530 | - | 3671560..3672519 (-) | 960 | WP_000008059.1 | ABC transporter permease | - |
| Q7W71_RS18535 | - | 3672520..3673578 (-) | 1059 | WP_002165208.1 | ABC transporter permease | - |
| Q7W71_RS18540 | - | 3673571..3675103 (-) | 1533 | WP_002014588.1 | ABC transporter ATP-binding protein | - |
| Q7W71_RS18545 | - | 3675212..3676279 (-) | 1068 | WP_002014587.1 | BMP family protein | - |
| Q7W71_RS18550 | - | 3676370..3677095 (-) | 726 | WP_002088063.1 | GntR family transcriptional regulator | - |
| Q7W71_RS18555 | - | 3677634..3680018 (-) | 2385 | WP_002014584.1 | DNA translocase FtsK | - |
| Q7W71_RS18560 | - | 3680233..3680436 (-) | 204 | WP_002088064.1 | YlzJ-like family protein | - |
| Q7W71_RS18565 | tepA | 3680433..3681182 (-) | 750 | WP_002014582.1 | translocation-enhancing protein TepA | - |
| Q7W71_RS18570 | - | 3681315..3682196 (-) | 882 | WP_002140633.1 | IS3 family transposase | - |
| Q7W71_RS18575 | - | 3682205..3682501 (-) | 297 | WP_002135468.1 | transposase | - |
| Q7W71_RS18580 | - | 3682590..3684260 (-) | 1671 | WP_002014581.1 | ribonuclease J | - |
| Q7W71_RS18585 | dapA | 3684869..3685747 (-) | 879 | WP_002014579.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| Q7W71_RS18590 | dapG | 3685759..3686991 (-) | 1233 | WP_002088068.1 | aspartate kinase | - |
| Q7W71_RS18595 | asd | 3687015..3688061 (-) | 1047 | WP_002014577.1 | aspartate-semialdehyde dehydrogenase | - |
| Q7W71_RS18600 | dpaB | 3688211..3688810 (-) | 600 | WP_002111357.1 | dipicolinate synthase subunit B | - |
| Q7W71_RS18605 | dpaA | 3688807..3689709 (-) | 903 | WP_002128797.1 | dipicolinic acid synthetase subunit A | - |
| Q7W71_RS18610 | - | 3689882..3690130 (-) | 249 | WP_002014571.1 | YlmC/YmxH family sporulation protein | - |
| Q7W71_RS18615 | - | 3690267..3691508 (-) | 1242 | WP_002088150.1 | pitrilysin family protein | - |
| Q7W71_RS18620 | - | 3691595..3692494 (-) | 900 | WP_002128798.1 | polysaccharide deacetylase family protein | - |
| Q7W71_RS18625 | pnp | 3692649..3694802 (-) | 2154 | WP_002014567.1 | polyribonucleotide nucleotidyltransferase | - |
| Q7W71_RS18630 | rpsO | 3694964..3695233 (-) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| Q7W71_RS18635 | ribF | 3695334..3696305 (-) | 972 | WP_002128800.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| Q7W71_RS18640 | truB | 3696349..3697272 (-) | 924 | WP_002014562.1 | tRNA pseudouridine(55) synthase TruB | - |
| Q7W71_RS18645 | rbfA | 3697363..3697719 (-) | 357 | WP_000776437.1 | 30S ribosome-binding factor RbfA | - |
| Q7W71_RS18650 | - | 3697735..3698016 (-) | 282 | WP_002088157.1 | DUF503 domain-containing protein | - |
| Q7W71_RS18655 | infB | 3698013..3700079 (-) | 2067 | WP_002014558.1 | translation initiation factor IF-2 | - |
| Q7W71_RS18660 | - | 3700084..3700395 (-) | 312 | WP_001286519.1 | YlxQ family RNA-binding protein | - |
| Q7W71_RS18665 | rnpM | 3700396..3700668 (-) | 273 | WP_002088161.1 | RNase P modulator RnpM | - |
| Q7W71_RS18670 | nusA | 3700680..3701786 (-) | 1107 | WP_002014554.1 | transcription termination factor NusA | - |
| Q7W71_RS18675 | rimP | 3701804..3702274 (-) | 471 | WP_002146103.1 | ribosome maturation factor RimP | - |
| Q7W71_RS18680 | - | 3702608..3706909 (-) | 4302 | WP_002014551.1 | PolC-type DNA polymerase III | - |
| Q7W71_RS18685 | - | 3707034..3708734 (-) | 1701 | WP_002014550.1 | proline--tRNA ligase | - |
| Q7W71_RS18690 | rseP | 3708844..3710100 (-) | 1257 | WP_002088169.1 | RIP metalloprotease RseP | - |
| Q7W71_RS18695 | dxr | 3710118..3711260 (-) | 1143 | WP_002014547.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| Q7W71_RS18700 | cdsA | 3711284..3712075 (-) | 792 | WP_002088171.1 | phosphatidate cytidylyltransferase | - |
| Q7W71_RS18705 | - | 3712093..3712869 (-) | 777 | WP_002014545.1 | isoprenyl transferase | - |
| Q7W71_RS18710 | frr | 3712955..3713512 (-) | 558 | WP_000531506.1 | ribosome recycling factor | - |
| Q7W71_RS18715 | pyrH | 3713516..3714238 (-) | 723 | WP_002014544.1 | UMP kinase | - |
| Q7W71_RS18720 | tsf | 3714305..3715192 (-) | 888 | WP_002088177.1 | translation elongation factor Ts | - |
| Q7W71_RS18725 | rpsB | 3715296..3715997 (-) | 702 | WP_002088178.1 | 30S ribosomal protein S2 | - |
| Q7W71_RS18730 | codY | 3716352..3717131 (-) | 780 | WP_002014541.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| Q7W71_RS18735 | hslU | 3717209..3718600 (-) | 1392 | WP_002014539.1 | ATP-dependent protease ATPase subunit HslU | - |
| Q7W71_RS18740 | hslV | 3718623..3719165 (-) | 543 | WP_002014538.1 | ATP-dependent protease proteolytic subunit HslV | - |
| Q7W71_RS18745 | xerC | 3719208..3720107 (-) | 900 | WP_078175468.1 | tyrosine recombinase XerC | - |
| Q7W71_RS18750 | trmFO | 3720179..3721483 (-) | 1305 | WP_002014534.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| Q7W71_RS18755 | topA | 3721532..3723610 (-) | 2079 | WP_002088184.1 | type I DNA topoisomerase | - |
| Q7W71_RS18760 | dprA | 3723755..3724624 (-) | 870 | WP_002014531.1 | DNA-processing protein DprA | - |
| Q7W71_RS18765 | sucD | 3724713..3725615 (-) | 903 | WP_000115186.1 | succinate--CoA ligase subunit alpha | - |
| Q7W71_RS18770 | sucC | 3725635..3726795 (-) | 1161 | WP_002014529.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| Q7W71_RS18775 | - | 3726989..3727762 (-) | 774 | WP_002014527.1 | ribonuclease HII | - |
| Q7W71_RS18780 | ylqF | 3727818..3728708 (-) | 891 | WP_002014526.1 | ribosome biogenesis GTPase YlqF | - |
| Q7W71_RS18785 | lepB | 3728729..3729280 (-) | 552 | WP_002066791.1 | signal peptidase I | - |
| Q7W71_RS18790 | rplS | 3729381..3729725 (-) | 345 | WP_002014524.1 | 50S ribosomal protein L19 | - |
| Q7W71_RS18795 | trmD | 3729872..3730606 (-) | 735 | WP_002014522.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| Q7W71_RS18800 | rimM | 3730606..3731121 (-) | 516 | WP_002014521.1 | ribosome maturation factor RimM | - |
| Q7W71_RS18805 | - | 3731243..3731470 (-) | 228 | WP_002088196.1 | KH domain-containing protein | - |
| Q7W71_RS18810 | rpsP | 3731485..3731757 (-) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| Q7W71_RS18815 | ffh | 3731858..3733207 (-) | 1350 | WP_002014519.1 | signal recognition particle protein | - |
| Q7W71_RS18820 | - | 3733220..3733552 (-) | 333 | WP_000891061.1 | putative DNA-binding protein | - |
| Q7W71_RS18825 | ftsY | 3733685..3734674 (-) | 990 | WP_305453214.1 | signal recognition particle-docking protein FtsY | - |
| Q7W71_RS18830 | smc | 3734689..3738258 (-) | 3570 | WP_002014517.1 | chromosome segregation protein SMC | - |
| Q7W71_RS18835 | rncS | 3738407..3739144 (-) | 738 | WP_002033792.1 | ribonuclease III | - |
| Q7W71_RS18840 | acpP | 3739203..3739436 (-) | 234 | WP_002014515.1 | acyl carrier protein | - |
| Q7W71_RS18845 | fabG | 3739506..3740246 (-) | 741 | WP_002014514.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| Q7W71_RS18850 | fabD | 3740246..3741190 (-) | 945 | WP_002014512.1 | ACP S-malonyltransferase | - |
| Q7W71_RS18855 | plsX | 3741205..3742197 (-) | 993 | WP_002128828.1 | phosphate acyltransferase PlsX | - |
| Q7W71_RS18860 | fapR | 3742194..3742787 (-) | 594 | WP_000747354.1 | transcription factor FapR | - |
| Q7W71_RS18865 | recG | 3742876..3744924 (-) | 2049 | WP_002014510.1 | ATP-dependent DNA helicase RecG | - |
| Q7W71_RS18870 | - | 3745348..3747024 (-) | 1677 | WP_002014508.1 | DAK2 domain-containing protein | - |
| Q7W71_RS18875 | - | 3747047..3747409 (-) | 363 | WP_002014507.1 | Asp23/Gls24 family envelope stress response protein | - |
| Q7W71_RS18880 | rpmB | 3747788..3747976 (+) | 189 | WP_000124776.1 | 50S ribosomal protein L28 | - |
| Q7W71_RS18885 | spoVM | 3748050..3748130 (-) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| Q7W71_RS18890 | - | 3748197..3748877 (-) | 681 | WP_002014506.1 | thiamine diphosphokinase | - |
Sequence
Protein
Download Length: 343 a.a. Molecular weight: 37384.32 Da Isoelectric Point: 5.0859
>NTDB_id=866224 Q7W71_RS18485 WP_002014599.1 3662699..3663730(-) (recA) [Bacillus mycoides strain PAMC 29627]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERRISTISSGSLALDVALGVGGYPRGRVIEIYGPESSGKTTVSLHAIAE
VQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT
KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFF
VREHHGIGENSGVEDTEDSTRQD
MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERRISTISSGSLALDVALGVGGYPRGRVIEIYGPESSGKTTVSLHAIAE
VQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT
KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFF
VREHHGIGENSGVEDTEDSTRQD
Nucleotide
Download Length: 1032 bp
>NTDB_id=866224 Q7W71_RS18485 WP_002014599.1 3662699..3663730(-) (recA) [Bacillus mycoides strain PAMC 29627]
ATGAGCGATCGTCAAGCGGCATTAGATATGGCGTTAAAACAAATAGAGAAGCAATTCGGTAAAGGTTCAATTATGAAATT
AGGAGAACAAGCGGAGCGTAGAATTTCTACAATTTCAAGTGGTTCTTTAGCACTTGATGTGGCACTAGGGGTAGGCGGAT
ACCCACGTGGCCGTGTTATTGAAATTTATGGACCTGAAAGTTCAGGTAAAACAACAGTTTCATTACACGCAATCGCGGAA
GTACAGCGTCAAGGTGGACAAGCAGCGTTCATTGATGCGGAGCATGCAATGGATCCTGTATATGCACAAAAATTAGGTGT
TAACATAGATGAATTACTATTATCACAGCCTGATACAGGGGAGCAAGGACTAGAAATCGCAGAAGCACTTGTACGAAGTG
GAGCGGTTGATATTATCGTAATTGACTCTGTGGCAGCTCTTGTACCGAAAGCTGAGATCGAAGGGGACATGGGTGACTCT
CACGTTGGTTTACAAGCACGTTTAATGTCACAAGCACTTCGTAAACTTTCAGGTGCAATCAACAAATCAAAAACAATCGC
AATCTTTATCAACCAAATTCGTGAAAAAGTTGGGGTTATGTTCGGGAACCCAGAAACAACTCCAGGTGGTCGTGCGTTGA
AATTCTATTCAACTGTCCGTCTTGAAGTACGTCGTGCTGAGCAGTTAAAGCAAGGTAACGATATTGTTGGTAATAAAACG
AAAGTAAAAGTAGTTAAAAATAAAGTAGCACCGCCATTCCGTGTTGCTGAAGTTGATATTATGTACGGAGAAGGTATTTC
AAGAGAAGGTGAAATCTTAGATATGGCTTCTGAACTTGATATCGTTCAAAAGAGCGGTGCTTGGTACTCTTATAATGAAG
AACGCTTAGGACAAGGTCGTGAAAATTCGAAGCAATTCTTAAAAGAGAATACGGATTTAAGAGAAGAAATTGCCTTCTTT
GTTCGTGAACATCACGGAATTGGTGAAAACTCTGGTGTTGAAGACACGGAAGATTCAACTCGTCAAGATTAA
ATGAGCGATCGTCAAGCGGCATTAGATATGGCGTTAAAACAAATAGAGAAGCAATTCGGTAAAGGTTCAATTATGAAATT
AGGAGAACAAGCGGAGCGTAGAATTTCTACAATTTCAAGTGGTTCTTTAGCACTTGATGTGGCACTAGGGGTAGGCGGAT
ACCCACGTGGCCGTGTTATTGAAATTTATGGACCTGAAAGTTCAGGTAAAACAACAGTTTCATTACACGCAATCGCGGAA
GTACAGCGTCAAGGTGGACAAGCAGCGTTCATTGATGCGGAGCATGCAATGGATCCTGTATATGCACAAAAATTAGGTGT
TAACATAGATGAATTACTATTATCACAGCCTGATACAGGGGAGCAAGGACTAGAAATCGCAGAAGCACTTGTACGAAGTG
GAGCGGTTGATATTATCGTAATTGACTCTGTGGCAGCTCTTGTACCGAAAGCTGAGATCGAAGGGGACATGGGTGACTCT
CACGTTGGTTTACAAGCACGTTTAATGTCACAAGCACTTCGTAAACTTTCAGGTGCAATCAACAAATCAAAAACAATCGC
AATCTTTATCAACCAAATTCGTGAAAAAGTTGGGGTTATGTTCGGGAACCCAGAAACAACTCCAGGTGGTCGTGCGTTGA
AATTCTATTCAACTGTCCGTCTTGAAGTACGTCGTGCTGAGCAGTTAAAGCAAGGTAACGATATTGTTGGTAATAAAACG
AAAGTAAAAGTAGTTAAAAATAAAGTAGCACCGCCATTCCGTGTTGCTGAAGTTGATATTATGTACGGAGAAGGTATTTC
AAGAGAAGGTGAAATCTTAGATATGGCTTCTGAACTTGATATCGTTCAAAAGAGCGGTGCTTGGTACTCTTATAATGAAG
AACGCTTAGGACAAGGTCGTGAAAATTCGAAGCAATTCTTAAAAGAGAATACGGATTTAAGAGAAGAAATTGCCTTCTTT
GTTCGTGAACATCACGGAATTGGTGAAAACTCTGGTGTTGAAGACACGGAAGATTCAACTCGTCAAGATTAA
Similar proteins
Only experimentally validated proteins are listed.