Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WHO46_RS20830 Genome accession   NZ_CP148127
Coordinates   4248064..4248600 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli isolate FELIX_MS59     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4243064..4253600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO46_RS20810 soxR 4244792..4245256 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  WHO46_RS20815 soxS 4245342..4245665 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  WHO46_RS20820 pdeC 4245668..4247254 (-) 1587 WP_000019548.1 c-di-GMP phosphodiesterase PdeC -
  WHO46_RS20825 yjcB 4247684..4247965 (+) 282 WP_001295689.1 YjcB family protein -
  WHO46_RS20830 ssb 4248064..4248600 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  WHO46_RS20835 uvrA 4248854..4251676 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  WHO46_RS20840 yjbR 4251711..4252067 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  WHO46_RS20845 yjbQ 4252071..4252487 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  WHO46_RS20850 aphA 4252598..4253311 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=865718 WHO46_RS20830 WP_000168305.1 4248064..4248600(-) (ssb) [Escherichia coli isolate FELIX_MS59]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=865718 WHO46_RS20830 WP_000168305.1 4248064..4248600(-) (ssb) [Escherichia coli isolate FELIX_MS59]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489