Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   Q6H37_RS22645 Genome accession   NZ_CP131467
Coordinates   4918980..4920056 (-) Length   358 a.a.
NCBI ID   WP_412523884.1    Uniprot ID   -
Organism   Clostridium sp. JS66     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4913980..4925056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6H37_RS22620 (Q6H37_22625) - 4914111..4914467 (-) 357 WP_029161526.1 SMR family transporter -
  Q6H37_RS22625 (Q6H37_22630) - 4914464..4915717 (-) 1254 WP_318736796.1 hypothetical protein -
  Q6H37_RS22630 (Q6H37_22635) - 4915756..4916622 (-) 867 WP_318736798.1 decaprenyl-phosphate phosphoribosyltransferase -
  Q6H37_RS22635 (Q6H37_22640) spoVS 4916774..4917034 (-) 261 WP_007060056.1 stage V sporulation protein SpoVS -
  Q6H37_RS22640 (Q6H37_22645) rny 4917175..4918716 (-) 1542 WP_318736800.1 ribonuclease Y -
  Q6H37_RS22645 (Q6H37_22650) recA 4918980..4920056 (-) 1077 WP_412523884.1 recombinase RecA Machinery gene
  Q6H37_RS22650 (Q6H37_22655) pgsA 4920394..4920981 (-) 588 WP_318736801.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  Q6H37_RS22655 (Q6H37_22660) rimO 4920965..4922302 (-) 1338 WP_318736802.1 30S ribosomal protein S12 methylthiotransferase RimO -
  Q6H37_RS22660 (Q6H37_22665) - 4922399..4924663 (-) 2265 WP_318736804.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38721.33 Da        Isoelectric Point: 7.2954

>NTDB_id=862501 Q6H37_RS22645 WP_412523884.1 4918980..4920056(-) (recA) [Clostridium sp. JS66]
MGNVNGEKLKALEAALGQIEKQFGKGSIMKLGEHSTLDIEAISTGCLDLDIALGIGGVPRGRVVEIYGPESSGKTTVALH
IVAEAQKAAGAAAFIDAEHALDPVYARALGVDIENLIVSQPDTGEQALEIAEALVRSGAVDVIVVDSVAALVPKAEIEGE
MGDSHVGLQARLMSQALRKLTGAINKSKCVIIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDIRRIDSIKQGDSIV
GNRTRVKVTKNKVAPPFKQAEFDIMYNQGISREGNVLDVGVREELVQKSGAWFAYKENRLGQGRENAKQFLKENSSILCE
IENKIREKYELPIIKPSANKAEAKNENKSKQEANSENK

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=862501 Q6H37_RS22645 WP_412523884.1 4918980..4920056(-) (recA) [Clostridium sp. JS66]
TTGGGAAACGTTAATGGCGAAAAGTTAAAGGCTTTAGAAGCTGCACTTGGACAGATAGAGAAACAATTTGGAAAAGGATC
TATAATGAAATTAGGGGAACATAGTACTTTAGATATAGAAGCTATATCAACAGGATGTTTAGATCTTGATATAGCTTTAG
GGATAGGTGGTGTTCCAAGAGGCAGAGTAGTAGAGATATATGGCCCTGAATCTTCAGGTAAAACTACTGTTGCACTGCAT
ATAGTAGCTGAAGCGCAAAAAGCTGCAGGAGCTGCTGCATTTATAGATGCAGAGCATGCATTAGATCCAGTTTATGCAAG
AGCATTAGGTGTAGATATAGAAAACTTAATAGTATCCCAACCAGATACAGGAGAACAAGCATTAGAAATAGCTGAAGCTT
TAGTAAGATCTGGAGCTGTCGATGTAATTGTTGTAGATTCTGTTGCGGCTTTAGTTCCTAAGGCTGAAATAGAAGGAGAA
ATGGGAGATTCACATGTGGGATTACAGGCAAGACTTATGTCTCAAGCTTTGAGAAAACTTACAGGAGCTATAAATAAGTC
AAAATGTGTGATTATATTTATAAACCAATTAAGGGAAAAAGTTGGTGTTATGTTTGGAAATCCTGAAACTACACCAGGTG
GAAGAGCATTAAAATTCTATGCTTCAGTAAGAATGGATATTAGAAGAATAGATTCCATAAAACAGGGAGATTCAATTGTA
GGTAATAGAACAAGAGTAAAAGTTACTAAAAATAAAGTTGCACCACCATTTAAACAAGCGGAATTTGATATAATGTATAA
TCAAGGAATATCAAGAGAAGGAAATGTATTAGATGTAGGAGTAAGGGAAGAACTTGTACAGAAAAGTGGAGCATGGTTTG
CATATAAAGAAAATAGACTTGGTCAAGGAAGAGAAAATGCAAAACAATTTTTAAAGGAAAATTCAAGTATATTATGTGAA
ATAGAAAATAAAATAAGGGAAAAATATGAGTTACCTATTATTAAACCTAGTGCTAATAAAGCTGAAGCTAAGAATGAAAA
TAAATCAAAACAAGAAGCTAATTCTGAAAATAAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

72.897

89.665

0.654
  recA Pseudomonas stutzeri DSM 10701

67.601

89.665

0.606
  recA Vibrio cholerae strain A1552

67.188

89.385

0.601
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.188

89.385

0.601
  recA Acinetobacter baylyi ADP1

62.319

96.369

0.601
  recA Glaesserella parasuis strain SC1401

66.875

89.385

0.598
  recA Ralstonia pseudosolanacearum GMI1000

68.932

86.313

0.595
  recA Neisseria gonorrhoeae strain FA1090

66.355

89.665

0.595
  recA Neisseria gonorrhoeae MS11

66.355

89.665

0.595
  recA Neisseria gonorrhoeae MS11

66.355

89.665

0.595
  recA Latilactobacillus sakei subsp. sakei 23K

65.944

90.223

0.595
  recA Acinetobacter baumannii D1279779

66.044

89.665

0.592
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.363

93.017

0.589
  recA Streptococcus mutans UA159

59.659

98.324

0.587
  recA Streptococcus mitis NCTC 12261

63.526

91.899

0.584
  recA Streptococcus pneumoniae Rx1

63.526

91.899

0.584
  recA Streptococcus pneumoniae D39

63.526

91.899

0.584
  recA Streptococcus pneumoniae R6

63.526

91.899

0.584
  recA Streptococcus pneumoniae TIGR4

63.526

91.899

0.584
  recA Streptococcus mitis SK321

63.222

91.899

0.581
  recA Lactococcus lactis subsp. cremoris KW2

63.222

91.899

0.581
  recA Streptococcus pyogenes NZ131

63.303

91.341

0.578
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.889

90.503

0.578
  recA Helicobacter pylori strain NCTC11637

63.385

90.782

0.575
  recA Helicobacter pylori 26695

63.385

90.782

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.062

90.223

0.542