Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   Q3V59_RS06110 Genome accession   NZ_CP130520
Coordinates   1278328..1279371 (+) Length   347 a.a.
NCBI ID   WP_303062299.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA24-SX     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1273328..1284371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V59_RS06085 - 1273591..1274295 (+) 705 WP_000646223.1 SDR family NAD(P)-dependent oxidoreductase -
  Q3V59_RS06090 - 1274400..1275227 (+) 828 WP_000214892.1 YmfK family protein -
  Q3V59_RS06095 - 1275246..1275638 (+) 393 WP_000859443.1 RodZ family helix-turn-helix domain-containing protein -
  Q3V59_RS06100 pgsA 1275672..1276250 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  Q3V59_RS06105 - 1277012..1278163 (+) 1152 WP_000020366.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  Q3V59_RS06110 recA 1278328..1279371 (+) 1044 WP_303062299.1 recombinase RecA Machinery gene
  Q3V59_RS06115 rny 1279725..1281284 (+) 1560 WP_001050913.1 ribonuclease Y -
  Q3V59_RS06120 - 1281581..1281796 (-) 216 WP_000026308.1 hypothetical protein -
  Q3V59_RS06125 - 1281970..1282767 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37640.53 Da        Isoelectric Point: 4.8509

>NTDB_id=859315 Q3V59_RS06110 WP_303062299.1 1278328..1279371(+) (recA) [Staphylococcus aureus strain SA24-SX]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNIGRRVSTTSTGSVTLDNALGVGGYPKGRIIEIFGPESSGKTTVALHAIA
EVQSNGGVAAFIDAEHALDPEYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKMYLKENPQIKEEIDR
KLREKLGISDGDVEETEDAPKSLFDEE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=859315 Q3V59_RS06110 WP_303062299.1 1278328..1279371(+) (recA) [Staphylococcus aureus strain SA24-SX]
TTGGATAACGATCGTCAAAAAGCTTTAGATACAGTAATTAAAAATATGGAGAAATCTTTCGGTAAAGGTGCCGTAATGAA
GTTGGGTGACAATATAGGTCGCCGAGTTTCAACTACATCAACTGGTTCAGTTACATTAGATAATGCGCTAGGTGTAGGTG
GCTATCCTAAAGGACGAATTATTGAAATTTTTGGTCCTGAAAGTTCTGGTAAGACAACAGTAGCGCTTCACGCTATTGCT
GAAGTACAAAGTAATGGCGGGGTGGCAGCATTTATCGATGCTGAACATGCTTTAGATCCAGAATATGCTCAAGCATTAGG
CGTAGATATCGATAATTTATATTTATCGCAACCGGATCATGGTGAACAAGGTCTTGAAATCGCCGAAGCATTTGTTAGAA
GTGGTGCAGTTGATATTGTAGTTGTAGACTCAGTTGCTGCTTTAACACCTAAAGCTGAAATTGAAGGAGAAATGGGAGAC
ACTCACGTTGGTTTACAAGCTCGTTTAATGTCACAAGCGTTACGTAAACTTTCAGGTGCTATTTCTAAATCAAATACAAC
TGCTATTTTCATCAACCAAATTCGTGAAAAAGTTGGTGTTATGTTCGGTAATCCAGAGACTACACCAGGTGGACGTGCTT
TAAAATTCTATAGTTCAGTAAGACTAGAAGTACGTCGTGCAGAACAGCTTAAACAAGGACAAGAAATTGTAGGTAATAGA
ACTAAAATTAAAGTCGTTAAAAATAAAGTGGCACCACCATTTAGAGTAGCTGAAGTTGATATTATGTATGGACAAGGTAT
TTCTAAAGAGGGTGAACTTATTGATTTAGGTGTTGAAAACGACATCGTTGATAAATCAGGAGCATGGTATTCTTACAATG
GCGAACGAATGGGTCAAGGTAAGGAAAATGTTAAAATGTACTTGAAAGAAAACCCACAAATTAAAGAAGAAATTGATCGT
AAATTGAGAGAAAAATTAGGTATATCTGATGGTGATGTTGAAGAAACAGAAGATGCACCAAAGTCATTATTTGACGAAGA
ATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.133

95.389

0.726
  recA Latilactobacillus sakei subsp. sakei 23K

69.912

97.695

0.683
  recA Streptococcus pneumoniae TIGR4

64.655

100

0.648
  recA Streptococcus pneumoniae Rx1

64.655

100

0.648
  recA Streptococcus pneumoniae D39

64.655

100

0.648
  recA Streptococcus pneumoniae R6

64.655

100

0.648
  recA Streptococcus pyogenes NZ131

68.085

94.813

0.646
  recA Streptococcus mitis SK321

64.265

100

0.643
  recA Streptococcus mutans UA159

63.714

100

0.643
  recA Acinetobacter baumannii D1279779

64.08

100

0.643
  recA Neisseria gonorrhoeae MS11

65.487

97.695

0.64
  recA Neisseria gonorrhoeae MS11

65.487

97.695

0.64
  recA Neisseria gonorrhoeae strain FA1090

65.487

97.695

0.64
  recA Acinetobacter baylyi ADP1

63.977

100

0.64
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.602

97.695

0.631
  recA Streptococcus mitis NCTC 12261

65.766

95.965

0.631
  recA Lactococcus lactis subsp. cremoris KW2

65.257

95.389

0.622
  recA Helicobacter pylori 26695

63.343

98.271

0.622
  recA Helicobacter pylori strain NCTC11637

63.343

98.271

0.622
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.951

93.948

0.62
  recA Vibrio cholerae strain A1552

65.951

93.948

0.62
  recA Ralstonia pseudosolanacearum GMI1000

65.287

90.49

0.591
  recA Pseudomonas stutzeri DSM 10701

60.714

96.83

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

95.389

0.579
  recA Glaesserella parasuis strain SC1401

60.372

93.084

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.815

91.931

0.559