Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   Q2T90_RS11490 Genome accession   NZ_CP130489
Coordinates   2342876..2343922 (+) Length   348 a.a.
NCBI ID   WP_302885677.1    Uniprot ID   -
Organism   Staphylococcus devriesei strain GYZ2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2337876..2348922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2T90_RS11465 (Q2T90_11465) - 2338742..2339446 (+) 705 WP_103166287.1 SDR family oxidoreductase -
  Q2T90_RS11470 (Q2T90_11470) - 2339573..2340403 (+) 831 WP_302885676.1 YmfK family protein -
  Q2T90_RS11475 (Q2T90_11475) - 2340425..2340817 (+) 393 WP_103166289.1 RodZ family helix-turn-helix domain-containing protein -
  Q2T90_RS11480 (Q2T90_11480) pgsA 2340852..2341427 (+) 576 WP_103166290.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  Q2T90_RS11485 (Q2T90_11485) - 2341565..2342707 (+) 1143 WP_107506430.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  Q2T90_RS11490 (Q2T90_11490) recA 2342876..2343922 (+) 1047 WP_302885677.1 recombinase RecA Machinery gene
  Q2T90_RS11495 (Q2T90_11495) rny 2344231..2345790 (+) 1560 WP_107505949.1 ribonuclease Y -
  Q2T90_RS11500 (Q2T90_11500) - 2345962..2346177 (-) 216 WP_103166293.1 hypothetical protein -
  Q2T90_RS11505 (Q2T90_11505) - 2346337..2347131 (+) 795 WP_107505950.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37898.88 Da        Isoelectric Point: 5.1095

>NTDB_id=858608 Q2T90_RS11490 WP_302885677.1 2342876..2343922(+) (recA) [Staphylococcus devriesei strain GYZ2]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSVSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGSVAAFIDAEHALDPVYAEALGVDINNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENEIVDKSGAWYSYNGERMGQGKENVKTYLKENPQIKDEIDR
KLREKLGIFDGDIEEKEEEPSDTLFDDK

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=858608 Q2T90_RS11490 WP_302885677.1 2342876..2343922(+) (recA) [Staphylococcus devriesei strain GYZ2]
TTGGATAATGATCGTCAAAAAGCTCTAGATACAGTAATAAAAAATATGGAAAAATCTTTCGGTAAAGGTGCCGTAATGAA
ACTCGGTGATAATAAAGGTCGCCGTGTATCAAGTGTATCAAGTGGTTCAGTTACTTTAGATAATGCACTTGGAGTAGGTG
GCTACCCTAAAGGAAGAATCATTGAAATATATGGGCCAGAAAGTTCTGGTAAAACAACAGTAGCATTACATGCTATCGCA
GAGGTACAAAAAAACGGAAGCGTAGCAGCATTTATTGATGCCGAACACGCACTAGACCCTGTCTATGCTGAAGCGTTAGG
TGTAGATATTAATAACCTATATTTATCTCAACCTGACCACGGTGAACAAGGTTTAGAAATTGCAGAAGCATTCGTAAGAA
GTGGTGCGGTTGATATCGTAGTTGTAGACTCAGTTGCCGCATTAACTCCTAAAGCAGAGATAGAAGGGGAAATGGGCGAT
ACACATGTCGGTTTACAAGCTCGTTTAATGTCACAGGCGTTACGTAAACTTTCAGGTGCTATTTCAAAATCAAACACAAC
TGCTATCTTTATTAACCAAATTCGTGAAAAAGTCGGCGTTATGTTCGGTAACCCTGAAACTACTCCAGGTGGTAGAGCAT
TAAAATTCTATAGCTCCGTTCGTTTAGAAGTTCGTCGTGCTGAACAATTAAAACAAGGACAAGAAATTGTAGGTAATAGA
ACTAAAATTAAAGTCGTTAAAAATAAAGTTGCCCCGCCATTTAGAGTAGCTGAAGTTGACATTATGTATGGTCAAGGCAT
TTCTAAAGAAGGCGAATTGATTGATTTAGGTGTTGAAAATGAAATTGTAGATAAATCTGGCGCTTGGTATTCATATAATG
GTGAAAGAATGGGTCAAGGTAAAGAAAATGTTAAAACTTACCTTAAAGAAAACCCACAAATTAAAGATGAAATCGATCGT
AAATTACGTGAAAAACTTGGTATCTTTGATGGTGACATTGAAGAAAAAGAGGAAGAACCATCTGACACTTTATTTGATGA
TAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.994

93.678

0.721
  recA Latilactobacillus sakei subsp. sakei 23K

68.678

100

0.687
  recA Streptococcus pneumoniae TIGR4

65.13

99.713

0.649
  recA Streptococcus pneumoniae Rx1

65.13

99.713

0.649
  recA Streptococcus pneumoniae D39

65.13

99.713

0.649
  recA Streptococcus pneumoniae R6

65.13

99.713

0.649
  recA Streptococcus pyogenes NZ131

68.389

94.54

0.647
  recA Streptococcus mutans UA159

64

100

0.644
  recA Acinetobacter baylyi ADP1

64.535

98.851

0.638
  recA Streptococcus mitis SK321

64.723

98.563

0.638
  recA Streptococcus mitis NCTC 12261

66.066

95.69

0.632
  recA Acinetobacter baumannii D1279779

63.218

100

0.632
  recA Lactococcus lactis subsp. cremoris KW2

65.861

95.115

0.626
  recA Neisseria gonorrhoeae MS11

66.261

94.54

0.626
  recA Neisseria gonorrhoeae MS11

66.261

94.54

0.626
  recA Neisseria gonorrhoeae strain FA1090

66.261

94.54

0.626
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.653

94.54

0.621
  recA Helicobacter pylori 26695

65.244

94.253

0.615
  recA Helicobacter pylori strain NCTC11637

64.939

94.253

0.612
  recA Vibrio cholerae strain A1552

65.031

93.678

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.031

93.678

0.609
  recA Ralstonia pseudosolanacearum GMI1000

65.815

89.943

0.592
  recA Pseudomonas stutzeri DSM 10701

62.577

93.678

0.586
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

95.115

0.58
  recA Glaesserella parasuis strain SC1401

61.61

92.816

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.815

91.667

0.557