Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QYR02_RS16205 Genome accession   NZ_CP130429
Coordinates   3323954..3325000 (-) Length   348 a.a.
NCBI ID   WP_055868716.1    Uniprot ID   A0A4Y4BCG1
Organism   Microbacterium maritypicum strain MWF001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3318954..3330000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYR02_RS16180 (QYR02_16180) dapF 3319110..3319982 (-) 873 WP_055868710.1 diaminopimelate epimerase -
  QYR02_RS16185 (QYR02_16185) - 3320013..3320543 (-) 531 WP_302792626.1 dihydrofolate reductase family protein -
  QYR02_RS16190 (QYR02_16190) miaA 3320581..3321492 (-) 912 WP_302792628.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  QYR02_RS16195 (QYR02_16195) miaB 3321489..3323036 (-) 1548 WP_017830897.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  QYR02_RS16200 (QYR02_16200) - 3323085..3323558 (-) 474 WP_302792631.1 regulatory protein RecX -
  QYR02_RS16205 (QYR02_16205) recA 3323954..3325000 (-) 1047 WP_055868716.1 recombinase RecA Machinery gene
  QYR02_RS16210 (QYR02_16210) - 3325270..3325494 (-) 225 WP_055868718.1 DUF3046 domain-containing protein -
  QYR02_RS16215 (QYR02_16215) - 3325513..3325821 (-) 309 WP_017830901.1 helix-turn-helix domain-containing protein -
  QYR02_RS16220 (QYR02_16220) - 3325963..3326448 (-) 486 WP_055868720.1 CinA family protein -
  QYR02_RS16225 (QYR02_16225) pgsA 3326445..3327020 (-) 576 WP_017830903.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QYR02_RS16230 (QYR02_16230) - 3327020..3329755 (-) 2736 WP_302792639.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 36987.27 Da        Isoelectric Point: 5.5016

>NTDB_id=858128 QYR02_RS16205 WP_055868716.1 3323954..3325000(-) (recA) [Microbacterium maritypicum strain MWF001]
MPSPADREKSLETALAQIDRQFGKGSVMRLGSDERAPVAVIPTGSIALDVALGVGGLPRGRIVEIYGPESSGKTTLTLHA
IANAQRAGGIAAFIDAEHALDPDYAAKLGVDIDALLVSQPDTGEQALEIADMLVRSGAIDLIVIDSVAALVPRAEIEGEM
GDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRMDIRRIETLKDGTDAVG
NRTRVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDFGVEHAIVKKSGSWYTYDGDQLGQGKENARTFLLNNPDIALAI
ETQIKQKLGIGGAAVPAAADELAERRPA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=858128 QYR02_RS16205 WP_055868716.1 3323954..3325000(-) (recA) [Microbacterium maritypicum strain MWF001]
ATGCCATCACCCGCCGACCGCGAGAAGTCCCTCGAGACCGCCCTCGCCCAGATCGACCGCCAGTTCGGAAAGGGCTCGGT
CATGCGGCTGGGCAGCGATGAGCGTGCCCCCGTGGCCGTCATCCCCACCGGCTCCATCGCCCTCGACGTCGCCCTCGGCG
TCGGAGGTCTCCCGCGTGGTCGAATCGTCGAGATCTACGGACCGGAGTCCTCGGGTAAGACGACTCTCACCCTGCACGCG
ATCGCGAACGCTCAGCGCGCCGGCGGCATCGCCGCCTTCATCGACGCCGAGCACGCGCTCGACCCGGATTACGCCGCGAA
GCTCGGTGTCGACATCGACGCGCTTCTGGTCTCCCAGCCCGACACCGGTGAGCAGGCGCTCGAGATCGCCGACATGCTCG
TGCGCTCGGGGGCCATCGACCTCATCGTCATCGACTCCGTGGCCGCGCTCGTCCCTCGCGCCGAGATCGAGGGTGAGATG
GGCGACTCGCACGTGGGTCTGCAGGCGCGACTCATGTCACAGGCGCTGCGTAAGCTCACGGGTGGTCTGAACCAGACCAA
CACCACGATGATCTTCATCAACCAGCTTCGCGAGAAGATCGGTGTGTTCTTCGGCTCGCCCGAGACCACCGCCGGTGGTA
AGGCGCTGAAGTTCTACGCCTCGGTCCGCATGGACATCCGTCGTATCGAGACGCTGAAGGATGGCACCGACGCCGTCGGA
AACCGCACCAGGGTGAAGGTGGTGAAGAACAAGATGGCACCGCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCGT
CGGCATCTCCCGCGAAGGCAGCCTGATCGACTTCGGTGTCGAGCACGCCATCGTGAAGAAGTCGGGCTCGTGGTACACCT
ACGACGGAGATCAGCTGGGCCAGGGCAAGGAGAACGCGCGAACGTTCCTGCTCAACAACCCCGACATCGCGCTGGCCATC
GAGACGCAGATCAAGCAGAAGCTCGGCATCGGCGGCGCGGCTGTGCCGGCGGCTGCAGACGAGCTCGCCGAGCGTCGTCC
GGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y4BCG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

66.272

97.126

0.644
  recA Acinetobacter baylyi ADP1

65.192

97.414

0.635
  recA Ralstonia pseudosolanacearum GMI1000

66.667

93.966

0.626
  recA Neisseria gonorrhoeae MS11

63.557

98.563

0.626
  recA Neisseria gonorrhoeae strain FA1090

63.557

98.563

0.626
  recA Neisseria gonorrhoeae MS11

63.557

98.563

0.626
  recA Bacillus subtilis subsp. subtilis str. 168

65.559

95.115

0.624
  recA Acinetobacter baumannii D1279779

66.563

92.816

0.618
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.254

92.816

0.615
  recA Vibrio cholerae strain A1552

66.254

92.816

0.615
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.315

96.839

0.603
  recA Latilactobacillus sakei subsp. sakei 23K

61.357

97.414

0.598
  recA Streptococcus mitis SK321

59.827

99.425

0.595
  recA Helicobacter pylori 26695

59.42

99.138

0.589
  recA Helicobacter pylori strain NCTC11637

59.42

99.138

0.589
  recA Glaesserella parasuis strain SC1401

62.769

93.391

0.586
  recA Streptococcus mitis NCTC 12261

61.515

94.828

0.583
  recA Streptococcus pneumoniae TIGR4

61.212

94.828

0.58
  recA Streptococcus pneumoniae Rx1

61.212

94.828

0.58
  recA Streptococcus pneumoniae D39

61.212

94.828

0.58
  recA Streptococcus pneumoniae R6

61.212

94.828

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.79

94.54

0.575
  recA Streptococcus mutans UA159

60.486

94.54

0.572
  recA Lactococcus lactis subsp. cremoris KW2

60

94.828

0.569
  recA Streptococcus pyogenes NZ131

60.061

94.253

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.688

91.954

0.549