Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QYC30_RS06510 Genome accession   NZ_CP130347
Coordinates   1361342..1362400 (-) Length   352 a.a.
NCBI ID   WP_302676022.1    Uniprot ID   -
Organism   Thermosynechococcus sp. JY1339     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1356342..1367400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC30_RS06480 (QYC30_06480) - 1356444..1358075 (+) 1632 WP_302676018.1 helicase HerA domain-containing protein -
  QYC30_RS06485 (QYC30_06485) - 1358126..1358353 (+) 228 WP_011057929.1 ferredoxin family protein -
  QYC30_RS06490 (QYC30_06490) nagA 1358350..1359501 (+) 1152 WP_302676019.1 N-acetylglucosamine-6-phosphate deacetylase -
  QYC30_RS06495 (QYC30_06495) - 1359472..1359741 (-) 270 WP_149818861.1 CD225/dispanin family protein -
  QYC30_RS06500 (QYC30_06500) - 1359968..1360834 (+) 867 WP_302676020.1 tetratricopeptide repeat protein -
  QYC30_RS06505 (QYC30_06505) - 1360836..1361375 (+) 540 WP_302676021.1 N-acetyltransferase -
  QYC30_RS06510 (QYC30_06510) recA 1361342..1362400 (-) 1059 WP_302676022.1 recombinase RecA Machinery gene
  QYC30_RS06515 (QYC30_06515) - 1362475..1363263 (-) 789 WP_302676023.1 hypothetical protein -
  QYC30_RS06520 (QYC30_06520) - 1363296..1363754 (+) 459 WP_302676024.1 co-chaperone YbbN -
  QYC30_RS06525 (QYC30_06525) - 1363769..1364926 (+) 1158 WP_302676025.1 DUF58 domain-containing protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37685.94 Da        Isoelectric Point: 5.4983

>NTDB_id=858102 QYC30_RS06510 WP_302676022.1 1361342..1362400(-) (recA) [Thermosynechococcus sp. JY1339]
MSDTTLSPEKRKALELAVSQIERNFGKGSIMRLGDATRMKVETISSGALTLDLALGGGLPKGRIIEIYGPESSGKTTLAL
HAVAEVQKAGGVAAFVDAEHALDPTYAAALGVDIENLLVAQPDTGEVGLEIVDQLVRSTAVDIVVVDSVAALVPRAEIEG
DMGDSHVGLQARLMSQALRKITGNIGKTGCTVIFLNQLRQKIGITYGNPETTTGGTALKFYASVRLDIRRVQTLKKGTEE
FGIRAKVKVAKNKVAPPFRIAEFDIIFGKGISNLGCILDMAEETGVISRKGAWYSYNGENLAQGRDNTIKYMEENPSFAQ
EVEQQVRQKLDQGAVVSANTVTHTHDDMGDGE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=858102 QYC30_RS06510 WP_302676022.1 1361342..1362400(-) (recA) [Thermosynechococcus sp. JY1339]
ATGAGTGACACCACCCTTTCCCCCGAAAAGCGCAAAGCCCTTGAGCTTGCCGTCTCCCAAATCGAACGCAACTTTGGTAA
GGGCAGCATCATGCGCCTTGGGGATGCCACCCGCATGAAAGTGGAAACCATCTCTAGCGGGGCACTCACCCTTGACCTTG
CTTTGGGGGGTGGACTGCCGAAGGGGCGGATCATTGAAATTTATGGCCCTGAAAGTTCGGGGAAAACTACCTTGGCGCTC
CATGCCGTAGCTGAAGTCCAAAAAGCCGGTGGCGTGGCTGCCTTTGTCGATGCTGAACATGCTCTTGATCCCACCTATGC
AGCTGCCCTCGGTGTGGACATTGAAAACCTACTGGTGGCTCAGCCAGACACTGGCGAAGTGGGTCTAGAAATTGTTGATC
AACTGGTGCGCTCGACAGCCGTAGATATTGTGGTGGTGGACTCCGTTGCTGCCTTGGTGCCCCGCGCCGAAATTGAGGGG
GATATGGGGGATAGCCATGTGGGATTGCAAGCCCGCCTGATGAGCCAAGCCCTGCGCAAAATTACCGGTAATATTGGTAA
AACAGGCTGCACCGTGATTTTTTTGAACCAATTGCGGCAAAAAATTGGTATTACCTACGGTAACCCAGAAACGACAACGG
GGGGAACAGCACTTAAGTTCTACGCCTCAGTGCGTTTGGATATTCGGCGGGTGCAAACCCTGAAGAAGGGAACGGAGGAA
TTTGGGATTCGCGCCAAAGTCAAGGTGGCCAAAAACAAGGTGGCGCCGCCCTTTCGTATTGCCGAGTTTGACATTATTTT
TGGTAAGGGCATTTCCAATCTTGGCTGTATTCTTGATATGGCCGAGGAAACGGGTGTGATTAGCCGCAAAGGGGCTTGGT
ACTCCTACAACGGTGAAAATTTGGCCCAAGGGCGCGACAACACAATTAAATACATGGAGGAGAACCCCAGCTTTGCCCAA
GAGGTCGAACAGCAGGTGCGGCAAAAGCTAGACCAAGGGGCAGTTGTCTCCGCCAATACGGTGACTCATACCCACGATGA
CATGGGTGACGGAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

61.318

99.148

0.608
  recA Ralstonia pseudosolanacearum GMI1000

62.17

96.875

0.602
  recA Acinetobacter baylyi ADP1

62.242

96.307

0.599
  recA Streptococcus pneumoniae TIGR4

59.654

98.58

0.588
  recA Streptococcus pneumoniae R6

59.654

98.58

0.588
  recA Streptococcus pneumoniae D39

59.654

98.58

0.588
  recA Streptococcus pneumoniae Rx1

59.654

98.58

0.588
  recA Acinetobacter baumannii D1279779

63.19

92.614

0.585
  recA Glaesserella parasuis strain SC1401

59.249

98.295

0.582
  recA Neisseria gonorrhoeae MS11

62.654

92.045

0.577
  recA Neisseria gonorrhoeae strain FA1090

62.654

92.045

0.577
  recA Neisseria gonorrhoeae MS11

62.654

92.045

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

61.027

94.034

0.574
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60

95.17

0.571
  recA Streptococcus mitis SK321

61.846

92.33

0.571
  recA Streptococcus mitis NCTC 12261

61.846

92.33

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.349

98.58

0.565
  recA Streptococcus mutans UA159

61.231

92.33

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

62.187

90.909

0.565
  recA Helicobacter pylori 26695

60.55

92.898

0.562
  recA Helicobacter pylori strain NCTC11637

60.55

92.898

0.562
  recA Streptococcus pyogenes NZ131

60.245

92.898

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.612

95.17

0.548
  recA Lactococcus lactis subsp. cremoris KW2

58.951

92.045

0.543
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.589

92.614

0.543
  recA Vibrio cholerae strain A1552

58.589

92.614

0.543