Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I0P84_RS09070 Genome accession   NZ_AP024524
Coordinates   1869834..1870877 (+) Length   347 a.a.
NCBI ID   WP_004786150.1    Uniprot ID   A0AAU0NHN0
Organism   Acinetobacter variabilis strain RYU24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1864834..1875877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0P84_RS09035 (RYU24_17970) rraA 1864842..1865351 (-) 510 WP_004786136.1 ribonuclease E activity regulator RraA -
  I0P84_RS09040 (RYU24_17980) - 1865364..1866029 (-) 666 WP_004786137.1 NAD-dependent epimerase/dehydratase family protein -
  I0P84_RS09045 (RYU24_17990) rpsT 1866243..1866512 (+) 270 WP_004786139.1 30S ribosomal protein S20 -
  I0P84_RS15395 - 1866652..1866774 (-) 123 WP_004786141.1 hypothetical protein -
  I0P84_RS09050 (RYU24_18000) - 1866895..1867644 (-) 750 WP_034590199.1 histidine phosphatase family protein -
  I0P84_RS09055 (RYU24_18010) - 1867705..1868556 (-) 852 WP_214001311.1 3'(2'),5'-bisphosphate nucleotidase CysQ family protein -
  I0P84_RS09060 (RYU24_18020) - 1868569..1869255 (+) 687 WP_214001312.1 HAD-IA family hydrolase -
  I0P84_RS09065 (RYU24_18030) - 1869248..1869688 (+) 441 WP_004786147.1 RNA-binding S4 domain-containing protein -
  I0P84_RS09070 (RYU24_18040) recA 1869834..1870877 (+) 1044 WP_004786150.1 recombinase RecA Machinery gene
  I0P84_RS09075 (RYU24_18050) - 1870953..1871567 (+) 615 WP_214001313.1 regulatory protein RecX -
  I0P84_RS09085 (RYU24_18060) - 1872260..1873063 (+) 804 WP_214001314.1 YbgF trimerization domain-containing protein -
  I0P84_RS09090 (RYU24_18070) - 1873122..1874273 (-) 1152 WP_214001315.1 IS4-like element ISAbe18 family transposase -
  I0P84_RS09095 (RYU24_18080) lpxA 1874413..1875201 (-) 789 WP_005235299.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  I0P84_RS09100 (RYU24_18090) fabZ 1875198..1875683 (-) 486 WP_171064833.1 3-hydroxyacyl-ACP dehydratase FabZ -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37777.24 Da        Isoelectric Point: 4.9603

>NTDB_id=85810 I0P84_RS09070 WP_004786150.1 1869834..1870877(+) (recA) [Acinetobacter variabilis strain RYU24]
MDENKNKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
ECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TKVKVVKNKMAPPFREALFQILYGKGVNHLGELIDLAVQQEIVQKAGAWYSYQGDKIGQGKNNTIRYLEEHKELADTIEK
LIREQLLTTGKVVEDKDEEEPADFLDA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=85810 I0P84_RS09070 WP_004786150.1 1869834..1870877(+) (recA) [Acinetobacter variabilis strain RYU24]
ATGGATGAGAATAAAAACAAGGCGCTCAACGCTGCCTTAAGCCAGATTGAAAAACAGTTTGGTAAAAACACAGTGATGCG
TCTTGGTGACAATACCGTGCAAGCAGTTGAAGCTGTATCTACGGGTTCTTTAACGCTTGATATTGCACTCGGTATTGGTG
GTTTACCGAAAGGCCGTATTATCGAGATTTATGGTCCTGAATCTTCAGGTAAGACCACAATGACATTACAAGCAATTGCT
GAATGTCAAAAAGCTGGCGGTACATGTGCATTCATCGATGCCGAGCACGCACTTGATCCTCAATATGCCCGTAAACTCGG
TGTAGATATTGATAACCTGCTGGTTTCTCAGCCAGACAACGGTGAACAGGCACTTGAAATCGCTGACATGCTGGTACGCT
CTGGCGCAATTGACCTGATTGTAGTCGACTCTGTTGCTGCATTGACGCCTCGCGCCGAGATTGAAGGCGAAATGGGTGAC
TCGCATATGGGTCTGCAAGCACGTTTGATGAGCCAGGCACTGCGTAAAATTACCGGTAATGCCAAGCGTTCAAACTGTAT
GGTGATTTTCATTAACCAGATCCGTATGAAGATTGGTGTTATGTTCGGTAGCCCGGAAACGACTACTGGTGGTAATGCAC
TGAAATTCTATGCTTCTGTACGTCTGGATATCCGCCGTATCGGTCAGGTAAAAGAAGGCGACGAGATTGTAGGTTCTGAA
ACCAAAGTCAAAGTTGTGAAAAACAAAATGGCGCCTCCATTCAGAGAAGCTCTGTTCCAGATTCTGTATGGTAAAGGTGT
TAACCATCTTGGTGAACTGATTGATCTTGCAGTACAGCAAGAAATCGTTCAAAAAGCGGGTGCATGGTATTCATATCAAG
GTGACAAGATTGGCCAAGGTAAGAACAATACCATCCGTTACTTGGAAGAACACAAAGAGCTGGCGGATACCATTGAAAAA
CTGATCCGTGAGCAACTGCTTACTACAGGCAAAGTAGTCGAAGATAAAGACGAAGAAGAACCAGCAGACTTTCTGGATGC
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

90.258

100

0.908
  recA Acinetobacter baylyi ADP1

89.143

100

0.899
  recA Pseudomonas stutzeri DSM 10701

75.988

94.813

0.72
  recA Vibrio cholerae strain A1552

74.312

94.236

0.7
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.312

94.236

0.7
  recA Glaesserella parasuis strain SC1401

70.393

95.389

0.671
  recA Ralstonia pseudosolanacearum GMI1000

72.93

90.49

0.66
  recA Neisseria gonorrhoeae MS11

67.284

93.372

0.628
  recA Neisseria gonorrhoeae MS11

67.284

93.372

0.628
  recA Neisseria gonorrhoeae strain FA1090

67.284

93.372

0.628
  recA Helicobacter pylori strain NCTC11637

63.717

97.695

0.622
  recA Helicobacter pylori 26695

63.422

97.695

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.235

97.983

0.62
  recA Streptococcus pneumoniae TIGR4

61.047

99.135

0.605
  recA Streptococcus pneumoniae Rx1

61.047

99.135

0.605
  recA Streptococcus pneumoniae D39

61.047

99.135

0.605
  recA Streptococcus pneumoniae R6

61.047

99.135

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.84

95.389

0.599
  recA Streptococcus mutans UA159

60.058

98.847

0.594
  recA Streptococcus mitis NCTC 12261

59.767

98.847

0.591
  recA Bacillus subtilis subsp. subtilis str. 168

62.733

92.795

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.963

93.948

0.582
  recA Streptococcus mitis SK321

61.35

93.948

0.576
  recA Streptococcus pyogenes NZ131

61.538

93.66

0.576
  recA Lactococcus lactis subsp. cremoris KW2

59.133

93.084

0.55
  recA Latilactobacillus sakei subsp. sakei 23K

58.879

92.507

0.545

Multiple sequence alignment