Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QYS50_RS09470 Genome accession   NZ_CP129415
Coordinates   1949895..1951004 (-) Length   369 a.a.
NCBI ID   WP_407569014.1    Uniprot ID   -
Organism   Deinococcus altitudinis strain LMG 24022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1944895..1956004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYS50_RS09440 (QYS50_09440) - 1945029..1945685 (+) 657 WP_407569008.1 DUF1345 domain-containing protein -
  QYS50_RS09445 (QYS50_09445) - 1945755..1946495 (+) 741 WP_407569009.1 peptidylprolyl isomerase -
  QYS50_RS09450 (QYS50_09450) - 1946464..1947426 (-) 963 WP_407569010.1 histone deacetylase -
  QYS50_RS09455 (QYS50_09455) - 1947558..1947941 (-) 384 WP_407569011.1 hypothetical protein -
  QYS50_RS09460 (QYS50_09460) - 1948020..1948526 (-) 507 WP_407569012.1 hypothetical protein -
  QYS50_RS09465 (QYS50_09465) - 1948519..1949721 (-) 1203 WP_407569013.1 acetyl-CoA C-acyltransferase -
  QYS50_RS09470 (QYS50_09470) recA 1949895..1951004 (-) 1110 WP_407569014.1 recombinase RecA Machinery gene
  QYS50_RS09475 (QYS50_09475) thpR 1950988..1951872 (-) 885 WP_407569015.1 RNA 2',3'-cyclic phosphodiesterase -
  QYS50_RS09480 (QYS50_09480) priA 1952010..1954337 (+) 2328 WP_407569016.1 primosomal protein N' -
  QYS50_RS09485 (QYS50_09485) - 1954362..1954859 (+) 498 WP_407569017.1 Appr-1-p processing protein -
  QYS50_RS09490 (QYS50_09490) ccsA 1955011..1955760 (+) 750 WP_407569018.1 cytochrome c biogenesis protein CcsA -
  QYS50_RS09495 (QYS50_09495) - 1955753..1955896 (+) 144 WP_407569019.1 heme exporter protein CcmD -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 38872.52 Da        Isoelectric Point: 7.0400

>NTDB_id=853120 QYS50_RS09470 WP_407569014.1 1949895..1951004(-) (recA) [Deinococcus altitudinis strain LMG 24022]
MEKSSKADKTEKGGASAIDGNNTAQRGKAIEMAMSQIEKQFGKGAIMKLGAESKLDVQTISTGSLSLDLALGVGGVPKGR
VTEIYGPESGGKTTLALSIVAQSQRAGGTAAFIDAEHALDPVYARALGVNTDELLVAQPDNGEQALEIMELLVRSGAVDI
VVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTGVLSKTNTAAIFINQVREKIGVMYGNPETTTGGRALKFYSS
VRLDVRRIGQPVKTGNDSVGTTVRIKVVKNKVASPFKEVELTLLFGKGFDQLSDLVGLAADMEIVKKAGSFYSYGDERIG
QGKEKAIAYIAERPALEQEIRGRVMAAIKAGNVAPERPVAAPEALADVN

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=853120 QYS50_RS09470 WP_407569014.1 1949895..1951004(-) (recA) [Deinococcus altitudinis strain LMG 24022]
ATGGAAAAGTCGAGTAAGGCCGACAAGACAGAGAAGGGCGGCGCCAGCGCCATCGATGGCAACAACACCGCCCAGCGCGG
CAAGGCCATCGAGATGGCGATGAGTCAGATCGAGAAGCAGTTCGGCAAGGGGGCGATCATGAAGCTGGGCGCCGAGAGCA
AACTCGACGTGCAGACCATCAGCACCGGTAGCCTGAGCCTCGACCTGGCGCTGGGTGTGGGCGGCGTGCCCAAGGGCCGC
GTGACCGAGATTTACGGCCCCGAGTCGGGCGGCAAGACCACCCTGGCGCTGAGCATCGTGGCGCAGAGCCAGCGGGCCGG
AGGAACGGCGGCCTTCATCGACGCCGAGCACGCGCTCGACCCGGTGTACGCCCGCGCCCTGGGCGTGAACACCGACGAAC
TGCTGGTCGCGCAGCCCGACAACGGCGAGCAGGCGCTGGAGATCATGGAGCTGCTCGTCCGGTCGGGCGCGGTGGACATC
GTGGTGGTCGACAGTGTGGCCGCCCTGACACCCCGCGCCGAGATCGAGGGCGAGATGGGCGACAGCCTGCCCGGCCTTCA
GGCCCGCCTGATGTCGCAGGCGCTGCGCAAACTGACCGGCGTGCTCAGCAAAACCAACACCGCCGCGATCTTCATCAATC
AGGTGCGCGAGAAGATCGGCGTGATGTACGGCAACCCCGAGACCACCACCGGCGGACGCGCCTTGAAGTTCTATTCCAGC
GTGCGCCTCGACGTGCGCCGCATCGGGCAGCCGGTCAAGACCGGCAACGATTCGGTCGGCACCACCGTCAGGATCAAGGT
GGTGAAGAACAAGGTCGCCTCTCCCTTCAAGGAGGTCGAGCTGACCCTGCTGTTCGGCAAGGGCTTCGACCAGCTTTCCG
ACCTGGTGGGCCTGGCCGCCGACATGGAGATCGTCAAGAAGGCCGGCAGTTTCTACAGCTACGGCGACGAGCGCATCGGG
CAGGGCAAGGAGAAGGCCATCGCCTACATCGCCGAGCGCCCCGCGCTGGAGCAGGAGATTCGCGGGCGCGTGATGGCCGC
GATCAAGGCGGGCAACGTGGCGCCGGAACGGCCGGTCGCCGCTCCCGAGGCACTGGCCGACGTGAACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(28-289)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

86.446

89.973

0.778
  recA Latilactobacillus sakei subsp. sakei 23K

60.177

91.87

0.553
  recA Glaesserella parasuis strain SC1401

63.551

86.992

0.553
  recA Acinetobacter baumannii D1279779

64.444

85.366

0.55
  recA Streptococcus pneumoniae TIGR4

62.346

87.805

0.547
  recA Streptococcus pneumoniae Rx1

62.346

87.805

0.547
  recA Streptococcus pneumoniae D39

62.346

87.805

0.547
  recA Streptococcus pneumoniae R6

62.346

87.805

0.547
  recA Acinetobacter baylyi ADP1

64.127

85.366

0.547
  recA Streptococcus mitis NCTC 12261

62.037

87.805

0.545
  recA Streptococcus mitis SK321

62.037

87.805

0.545
  recA Streptococcus pyogenes NZ131

61.92

87.534

0.542
  recA Vibrio cholerae strain A1552

63.462

84.553

0.537
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.462

84.553

0.537
  recA Pseudomonas stutzeri DSM 10701

57.895

92.683

0.537
  recA Bacillus subtilis subsp. subtilis str. 168

63.754

83.74

0.534
  recA Streptococcus mutans UA159

60.681

87.534

0.531
  recA Neisseria gonorrhoeae MS11

59.317

87.263

0.518
  recA Neisseria gonorrhoeae MS11

59.317

87.263

0.518
  recA Neisseria gonorrhoeae strain FA1090

59.317

87.263

0.518
  recA Lactococcus lactis subsp. cremoris KW2

58.41

88.618

0.518
  recA Ralstonia pseudosolanacearum GMI1000

61.688

83.469

0.515
  recA Helicobacter pylori strain NCTC11637

58.696

87.263

0.512
  recA Helicobacter pylori 26695

58.333

87.805

0.512
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.917

85.095

0.501
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

54.545

89.431

0.488