Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   prwr041_RS03215 Genome accession   NZ_AP024484
Coordinates   845658..846677 (-) Length   339 a.a.
NCBI ID   WP_207154917.1    Uniprot ID   -
Organism   Prevotella herbatica strain WR041     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 840658..851677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  prwr041_RS03200 (prwr041_06230) - 841424..842974 (+) 1551 WP_207154914.1 glycine--tRNA ligase -
  prwr041_RS03205 (prwr041_06240) - 842974..843627 (+) 654 WP_207154915.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  prwr041_RS03210 (prwr041_06250) - 844192..845580 (+) 1389 WP_207154916.1 MATE family efflux transporter -
  prwr041_RS03215 (prwr041_06260) recA 845658..846677 (-) 1020 WP_207154917.1 recombinase RecA Machinery gene
  prwr041_RS03220 (prwr041_06270) - 846741..847979 (-) 1239 WP_207154919.1 saccharopine dehydrogenase family protein -
  prwr041_RS03225 (prwr041_06280) - 848007..848618 (-) 612 WP_207154921.1 DUF6621 family protein -
  prwr041_RS03230 (prwr041_06290) nhaD 848832..850196 (+) 1365 WP_207154923.1 sodium:proton antiporter NhaD -
  prwr041_RS03235 (prwr041_06300) - 850241..851650 (-) 1410 WP_207154924.1 ATP-binding protein -

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 36656.83 Da        Isoelectric Point: 5.5697

>NTDB_id=85298 prwr041_RS03215 WP_207154917.1 845658..846677(-) (recA) [Prevotella herbatica strain WR041]
MAKETDQAAAQSDKLKALQAAMSKIEKDFGKGSIMRMGDEKVENVDVIPTGSIGLNAALGVGGYPRGRVIEIYGPESSGK
TTLAIHAIAEAQKQGGIAAFIDAEHAFDRFYAQKLGVDVDNLWVSQPDNGEQALQIADELIRSSAVDILVIDSVAALTPK
KEIEGDMGDNVVGLQARLMSQALRKLTSTISKTNTCCVFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRVTSIK
DGDQVVGNQVRVKVVKNKVAPPFRKTEFEITFGEGISKVGEIVDLGVEYGVIQKSGSWFSYNGSKLAQGRDATKNLLKDN
PELCDELEGLIMQGIENKK

Nucleotide


Download         Length: 1020 bp        

>NTDB_id=85298 prwr041_RS03215 WP_207154917.1 845658..846677(-) (recA) [Prevotella herbatica strain WR041]
ATGGCAAAAGAAACAGATCAGGCTGCAGCTCAAAGCGATAAACTGAAAGCTTTGCAGGCAGCTATGTCTAAAATAGAAAA
AGATTTCGGCAAAGGTTCCATCATGAGAATGGGGGACGAAAAAGTCGAGAATGTAGATGTTATTCCAACGGGTAGCATTG
GACTAAACGCTGCTCTTGGTGTTGGTGGTTATCCTCGCGGACGTGTGATAGAAATCTATGGTCCAGAATCTTCTGGTAAG
ACGACTCTTGCCATTCACGCTATCGCAGAAGCGCAAAAGCAGGGTGGTATTGCTGCATTTATAGATGCAGAGCATGCCTT
TGACCGATTCTATGCACAGAAGTTGGGTGTTGATGTGGATAATCTATGGGTCAGCCAACCAGATAATGGAGAGCAGGCTT
TGCAGATTGCTGATGAACTTATCCGTTCAAGTGCTGTTGATATTCTTGTTATTGACTCAGTTGCCGCTCTTACTCCTAAG
AAGGAAATAGAGGGTGATATGGGTGATAATGTTGTTGGTCTTCAGGCTCGACTTATGAGTCAGGCTTTGCGTAAGCTCAC
TTCTACAATCAGCAAGACAAACACTTGTTGTGTATTTATCAATCAGTTGCGTGAAAAGATTGGTGTGATGTTTGGAAATC
CAGAAACTACAACTGGTGGTAACGCATTGAAGTTCTATAGTAGTGTTCGCCTTGATATACGTCGTGTTACAAGTATCAAA
GATGGCGATCAGGTTGTAGGTAATCAGGTGCGTGTTAAGGTTGTTAAGAATAAGGTCGCTCCTCCTTTCCGTAAGACTGA
ATTTGAAATTACTTTCGGTGAAGGTATTAGTAAGGTCGGTGAGATTGTAGACTTGGGCGTAGAATATGGCGTTATTCAGA
AGAGTGGTAGCTGGTTCAGCTATAATGGTTCTAAACTAGCTCAGGGACGTGATGCAACGAAAAATTTACTGAAAGATAAT
CCAGAACTCTGTGATGAACTTGAAGGACTTATCATGCAGGGAATAGAAAACAAGAAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.279

100

0.673
  recA Neisseria gonorrhoeae MS11

66.055

96.46

0.637
  recA Neisseria gonorrhoeae strain FA1090

66.055

96.46

0.637
  recA Neisseria gonorrhoeae MS11

66.055

96.46

0.637
  recA Ralstonia pseudosolanacearum GMI1000

68.75

89.676

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

64.537

92.33

0.596
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.608

93.215

0.593
  recA Helicobacter pylori 26695

62.5

94.395

0.59
  recA Glaesserella parasuis strain SC1401

63.175

92.92

0.587
  recA Latilactobacillus sakei subsp. sakei 23K

62.579

93.805

0.587
  recA Pseudomonas stutzeri DSM 10701

62.975

93.215

0.587
  recA Helicobacter pylori strain NCTC11637

62.187

94.395

0.587
  recA Acinetobacter baylyi ADP1

60.123

96.165

0.578
  recA Streptococcus pyogenes NZ131

60.938

94.395

0.575
  recA Streptococcus mitis NCTC 12261

60.748

94.69

0.575
  recA Streptococcus mitis SK321

60.436

94.69

0.572
  recA Acinetobacter baumannii D1279779

61.392

93.215

0.572
  recA Streptococcus pneumoniae Rx1

60.125

94.69

0.569
  recA Streptococcus pneumoniae R6

60.125

94.69

0.569
  recA Streptococcus pneumoniae TIGR4

60.125

94.69

0.569
  recA Streptococcus pneumoniae D39

60.125

94.69

0.569
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.076

93.215

0.569
  recA Vibrio cholerae strain A1552

61.076

93.215

0.569
  recA Lactococcus lactis subsp. cremoris KW2

58.841

96.755

0.569
  recA Streptococcus mutans UA159

60

94.395

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.988

98.525

0.552

Multiple sequence alignment