Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QYR55_RS09900 Genome accession   NZ_CP129328
Coordinates   2033018..2034151 (-) Length   377 a.a.
NCBI ID   WP_367561663.1    Uniprot ID   -
Organism   Streptococcus iniae strain Si 1-19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2028018..2039151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYR55_RS09870 (QYR55_09880) feoB 2028115..2030268 (-) 2154 WP_016356258.1 ferrous iron transport protein B -
  QYR55_RS09875 (QYR55_09885) - 2030243..2030740 (-) 498 WP_003100421.1 ferrous iron transport protein A -
  QYR55_RS09880 (QYR55_09890) - 2030918..2031217 (-) 300 WP_003100423.1 DUF1292 domain-containing protein -
  QYR55_RS09885 (QYR55_09895) ruvX 2031228..2031647 (-) 420 WP_037582983.1 Holliday junction resolvase RuvX -
  QYR55_RS09890 (QYR55_09900) - 2031644..2031913 (-) 270 WP_003100426.1 IreB family regulatory phosphoprotein -
  QYR55_RS09895 (QYR55_09905) spx 2032025..2032423 (-) 399 WP_367562276.1 transcriptional regulator Spx -
  QYR55_RS09900 (QYR55_09910) recA 2033018..2034151 (-) 1134 WP_367561663.1 recombinase RecA Machinery gene
  QYR55_RS09905 (QYR55_09915) - 2034233..2035505 (-) 1273 Protein_1897 competence/damage-inducible protein A -
  QYR55_RS09910 (QYR55_09920) - 2035640..2036173 (-) 534 WP_367562617.1 DNA-3-methyladenine glycosylase I -
  QYR55_RS09915 (QYR55_09925) ruvA 2036195..2036788 (-) 594 WP_003100432.1 Holliday junction branch migration protein RuvA -
  QYR55_RS09920 (QYR55_09930) - 2036790..2038013 (-) 1224 WP_003100433.1 MFS transporter -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 40606.20 Da        Isoelectric Point: 4.7890

>NTDB_id=852283 QYR55_RS09900 WP_367561663.1 2033018..2034151(-) (recA) [Streptococcus iniae strain Si 1-19]
MAKKVKKTEEITKKFGDDRRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIVAFIDAEHALDPAYAASLGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRG
NTQIKGTGDQKDSDIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKIGQGSE
NAKKFLADHPELFDEIDHKVRVKVGLVEDTEIEEVEEVSSTTDELILDLDNAIEIED

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=852283 QYR55_RS09900 WP_367561663.1 2033018..2034151(-) (recA) [Streptococcus iniae strain Si 1-19]
TTGGCGAAAAAAGTTAAAAAAACAGAAGAAATCACTAAAAAATTTGGTGACGACCGTAGAAAAGCTCTTGATGACGCGTT
AAAAAACATTGAAAAAGATTTCGGTAAAGGTGCTGTTATGCGTCTGGGAGAGCGTGCAGAGCAAAAAGTTCAAGTGATGA
GTTCTGGTAGTTTAGCACTTGATATTGCTTTAGGTGCTGGTGGCTATCCTAAGGGGCGTATTATTGAAATTTATGGGCCA
GAATCTTCAGGTAAAACAACAGTTGCCTTGCATGCTGTTGCTCAAGCTCAAAAAGAAGGTGGAATTGTCGCCTTTATTGA
TGCCGAACATGCACTTGATCCTGCTTATGCGGCTTCATTGGGTGTTAATATTGATGAATTGCTTTTATCACAACCAGATT
CTGGAGAGCAAGGACTTGAGATTGCAGGAAAATTGATTGACTCAGGTGCTGTTGATTTGGTTGTTGTTGACTCGGTTGCC
GCACTTGTACCACGTGCAGAAATTGATGGCGACATTGGTGATAGTCATGTTGGTTTACAAGCTCGAATGATGAGCCAAGC
CATGCGTAAACTCTCTGCATCAATTAATAAAACTAAAACAATTGCTATCTTTATTAACCAATTGCGTGAAAAAGTTGGGG
TTATGTTTGGTAATCCTGAGACAACTCCTGGTGGTCGTGCCTTGAAGTTCTACTCATCTGTTCGTTTAGATGTTCGTGGC
AATACTCAAATTAAAGGAACTGGCGATCAAAAAGATAGCGACATCGGTAAAGAAACCAAAATCAAGGTTGTTAAAAATAA
AGTTGCCCCACCTTTTAAAGTTGCAGAAGTTGAAATCATGTATGGTGAAGGAATTTCACGCACAGGAGAACTTGTTAAAA
TTGCATCTGACCTAGACATTATCCAAAAAGCCGGTGCATGGTTCTCTTATAATGGTGAAAAGATTGGTCAAGGATCTGAG
AATGCTAAAAAATTCTTGGCAGATCATCCAGAACTCTTTGATGAGATTGACCATAAAGTTCGTGTTAAAGTGGGCTTGGT
TGAAGATACAGAGATAGAAGAAGTTGAAGAAGTTTCATCAACAACAGACGAACTTATTTTAGATTTAGATAATGCTATTG
AAATTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

92.593

100

0.928
  recA Streptococcus mutans UA159

88.512

100

0.899
  recA Streptococcus mitis NCTC 12261

85.039

100

0.859
  recA Streptococcus mitis SK321

84.777

100

0.857
  recA Streptococcus pneumoniae Rx1

83.377

100

0.851
  recA Streptococcus pneumoniae D39

83.377

100

0.851
  recA Streptococcus pneumoniae R6

83.377

100

0.851
  recA Streptococcus pneumoniae TIGR4

83.377

100

0.851
  recA Lactococcus lactis subsp. cremoris KW2

76.923

93.103

0.716
  recA Latilactobacillus sakei subsp. sakei 23K

68.286

92.838

0.634
  recA Bacillus subtilis subsp. subtilis str. 168

68.693

87.268

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.696

90.716

0.56
  recA Neisseria gonorrhoeae strain FA1090

62.236

87.798

0.546
  recA Neisseria gonorrhoeae MS11

62.236

87.798

0.546
  recA Neisseria gonorrhoeae MS11

62.236

87.798

0.546
  recA Glaesserella parasuis strain SC1401

59.649

90.716

0.541
  recA Acinetobacter baumannii D1279779

59.012

91.247

0.538
  recA Vibrio cholerae O1 biovar El Tor strain E7946

57.88

92.573

0.536
  recA Vibrio cholerae strain A1552

57.88

92.573

0.536
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.971

91.512

0.531
  recA Acinetobacter baylyi ADP1

61.231

86.207

0.528
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.61

85.676

0.528
  recA Helicobacter pylori 26695

56.772

92.042

0.523
  recA Helicobacter pylori strain NCTC11637

56.772

92.042

0.523
  recA Ralstonia pseudosolanacearum GMI1000

58.61

87.798

0.515
  recA Pseudomonas stutzeri DSM 10701

57.927

87.003

0.504