Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QU610_RS05345 Genome accession   NZ_CP129105
Coordinates   1129187..1130230 (+) Length   347 a.a.
NCBI ID   WP_137296998.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP45k     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1124187..1135230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU610_RS05310 (QU610_05310) - 1124778..1124996 (+) 219 WP_001847091.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -
  QU610_RS05315 (QU610_05315) ccoP 1124998..1125876 (+) 879 WP_137297002.1 cytochrome-c oxidase, cbb3-type subunit III -
  QU610_RS05320 (QU610_05320) - 1125887..1126093 (+) 207 WP_000670506.1 DUF4006 family protein -
  QU610_RS05325 (QU610_05325) - 1126194..1126778 (+) 585 WP_128008980.1 hypothetical protein -
  QU610_RS05330 (QU610_05330) - 1126790..1127371 (+) 582 WP_137297001.1 hypothetical protein -
  QU610_RS05335 (QU610_05335) - 1127461..1128228 (+) 768 WP_137297000.1 hypothetical protein -
  QU610_RS05340 (QU610_05340) - 1128225..1129088 (-) 864 WP_137296999.1 menaquinone biosynthesis family protein -
  QU610_RS05345 (QU610_05345) recA 1129187..1130230 (+) 1044 WP_137296998.1 recombinase RecA Machinery gene
  QU610_RS05350 (QU610_05350) eno 1130242..1131522 (+) 1281 WP_137296997.1 phosphopyruvate hydratase -
  QU610_RS05355 (QU610_05355) - 1131515..1131790 (+) 276 WP_000146234.1 hypothetical protein -
  QU610_RS05360 (QU610_05360) - 1131808..1132404 (+) 597 WP_001901258.1 AMIN domain-containing protein -
  QU610_RS05365 (QU610_05365) - 1132409..1132897 (+) 489 WP_078241011.1 shikimate kinase -
  QU610_RS05370 (QU610_05370) - 1132919..1133875 (+) 957 WP_121070726.1 PDC sensor domain-containing protein -
  QU610_RS05375 (QU610_05375) rfaJ 1133872..1134990 (-) 1119 WP_137296996.1 HP0159 family lipopolysaccharide 1,6-glucosyltransferase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37624.36 Da        Isoelectric Point: 5.5047

>NTDB_id=850874 QU610_RS05345 WP_137296998.1 1129187..1130230(+) (recA) [Helicobacter pylori strain HP45k]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALADE
ITLKIKEGIGSNEEIMPLPDEPLEEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=850874 QU610_RS05345 WP_137296998.1 1129187..1130230(+) (recA) [Helicobacter pylori strain HP45k]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACGCTATTTCTACAGGCTCGTTAGGATTGGATCTAGCTTTAGGGA
TTGGGGGCGTTCCAAAGGGTAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGGAAGACCACTCTAAGTTTGCATATT
ATTGCAGAATGCCAAAAAAATGGCGGTGTGTGTGCGTTCATTGACGCTGAGCATGCCCTAGATGTGCATTACGCTAAGAG
ATTGGGCGTGGATACGGAAAATCTACTCGTTTCACAACCTGATACAGGCGAGCAAGCTTTAGAAATTTTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTAGTGGTGGTGGATTCGGTGGCGGCTCTTACGCCTAAAGCGGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGGCTTATGAGCCATGCGTTAAGAAAAATCACCGGTGTTTTGCACAAGATGAA
CACTACTCTCATTTTTATCAATCAAATCAGGATGAAGATTGGCATGATGGGTTATGGGAGTCCAGAGACCACAACCGGGG
GTAATGCCTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGAATCGCCGCTTTAAAACAAAACGAACAGCATATC
GGTAACAGGGCTAAAGCCAAAGTGGTTAAAAATAAAGTCGCTCCGCCCTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAAGGGATTTCTAAAGAGGGCGAAATCATTGATTATGGCGTGAAATTAGACATTGTGGATAAGAGTGGGGCATGGCTTA
GCTACCAGGATAAAAAGCTAGGGCAAGGCAGAGAAAACGCTAAAGCCTTGCTGAAAGAAGATAAAGCTCTAGCGGATGAA
ATCACTCTTAAGATTAAAGAGGGTATTGGCTCTAATGAAGAGATCATGCCCTTACCGGATGAGCCTTTAGAAGAAATGGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

99.712

100

0.997
  recA Helicobacter pylori 26695

99.135

100

0.991
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.659

94.524

0.744
  recA Neisseria gonorrhoeae MS11

66.769

93.66

0.625
  recA Neisseria gonorrhoeae MS11

66.769

93.66

0.625
  recA Neisseria gonorrhoeae strain FA1090

66.769

93.66

0.625
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.545

95.101

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

65.231

93.66

0.611
  recA Acinetobacter baumannii D1279779

64.615

93.66

0.605
  recA Acinetobacter baylyi ADP1

64.308

93.66

0.602
  recA Ralstonia pseudosolanacearum GMI1000

61.905

96.83

0.599
  recA Pseudomonas stutzeri DSM 10701

62.963

93.372

0.588
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.154

93.66

0.582
  recA Vibrio cholerae strain A1552

62.154

93.66

0.582
  recA Glaesserella parasuis strain SC1401

60.671

94.524

0.573
  recA Streptococcus pneumoniae Rx1

56.125

100

0.568
  recA Streptococcus pneumoniae D39

56.125

100

0.568
  recA Streptococcus pneumoniae R6

56.125

100

0.568
  recA Streptococcus pneumoniae TIGR4

56.125

100

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

54.902

100

0.565
  recA Streptococcus mitis NCTC 12261

57.44

96.83

0.556
  recA Lactococcus lactis subsp. cremoris KW2

58.055

94.813

0.55
  recA Streptococcus pyogenes NZ131

57.879

95.101

0.55
  recA Streptococcus mitis SK321

57.447

94.813

0.545
  recA Streptococcus mutans UA159

56.287

96.254

0.542
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.442

93.948

0.53