Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QVH39_RS18210 Genome accession   NZ_CP129025
Coordinates   3805283..3806341 (-) Length   352 a.a.
NCBI ID   WP_024907698.1    Uniprot ID   W7NUS2
Organism   Enterobacter pseudoroggenkampii strain SC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3800283..3811341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVH39_RS18195 (QVH39_18195) csrA 3801528..3801713 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  QVH39_RS18200 (QVH39_18200) alaS 3801955..3804582 (-) 2628 WP_061714571.1 alanine--tRNA ligase -
  QVH39_RS18205 (QVH39_18205) recX 3804714..3805214 (-) 501 WP_032640869.1 recombination regulator RecX -
  QVH39_RS18210 (QVH39_18210) recA 3805283..3806341 (-) 1059 WP_024907698.1 recombinase RecA Machinery gene
  QVH39_RS18215 (QVH39_18215) pncC 3806431..3806928 (-) 498 WP_024907699.1 nicotinamide-nucleotide amidase -
  QVH39_RS18220 (QVH39_18220) - 3807058..3807936 (-) 879 WP_032648011.1 metal ABC transporter substrate-binding protein -
  QVH39_RS18225 (QVH39_18225) - 3807951..3808811 (-) 861 WP_024907701.1 metal ABC transporter permease -
  QVH39_RS18230 (QVH39_18230) - 3808808..3809461 (-) 654 WP_061714569.1 ATP-binding cassette domain-containing protein -
  QVH39_RS18235 (QVH39_18235) mltB 3809774..3810874 (-) 1101 WP_193745671.1 lytic murein transglycosylase B -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37827.19 Da        Isoelectric Point: 4.7456

>NTDB_id=850689 QVH39_RS18210 WP_024907698.1 3805283..3806341(-) (recA) [Enterobacter pseudoroggenkampii strain SC1]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFFGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKENPAAAKEI
EKKVRELLLNNQDSTPDFAVDSADAEETNEDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=850689 QVH39_RS18210 WP_024907698.1 3805283..3806341(-) (recA) [Enterobacter pseudoroggenkampii strain SC1]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCCACCGGTTCGCTTTCTCTGGATATCGCGCTGGGCG
CTGGCGGTCTGCCTATGGGCCGTATCGTAGAAATCTACGGGCCAGAGTCCTCCGGTAAAACCACCCTGACGCTGCAGGTG
ATTGCCGCGGCACAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCCGAGCACGCGCTGGACCCTGTTTATGCCCGCAA
ACTGGGTGTAGATATCGACAACCTGCTGTGTTCTCAGCCGGACACCGGTGAGCAGGCGCTGGAAATTTGTGACGCGCTGG
CGCGTTCTGGTGCTGTTGACGTTATCGTGGTCGACTCCGTTGCCGCACTGACGCCAAAAGCCGAAATCGAAGGTGAAATC
GGCGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCCGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATCGGCGTGATGTTCGGTAACCCGGAAACGACTACCGGTGGTA
ACGCACTGAAATTCTACGCCTCTGTCCGTCTGGATATCCGCCGTATCGGCGCGGTGAAAGAGGGCGAGAACGTGGTGGGT
AGCGAAACCCGCGTGAAGGTTGTGAAGAACAAAATTGCCGCGCCGTTCAAACAGGCCGAGTTCCAGATCCTCTACGGCGA
AGGTATTAACTTCTTCGGTGAGCTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCGGGCGCCTGGTACAGCT
ACAACGGTGACAAGATTGGTCAGGGTAAAGCGAACGCGATCTCCTGGCTGAAAGAGAACCCGGCTGCAGCGAAAGAGATT
GAGAAGAAGGTACGTGAGCTTCTGCTGAACAACCAGGACTCCACGCCAGATTTCGCGGTTGATAGCGCGGATGCTGAAGA
AACTAACGAAGACTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W7NUS2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

85.196

94.034

0.801
  recA Vibrio cholerae O1 biovar El Tor strain E7946

85.196

94.034

0.801
  recA Pseudomonas stutzeri DSM 10701

73.199

98.58

0.722
  recA Acinetobacter baumannii D1279779

72.046

98.58

0.71
  recA Acinetobacter baylyi ADP1

74.39

93.182

0.693
  recA Glaesserella parasuis strain SC1401

68.946

99.716

0.688
  recA Ralstonia pseudosolanacearum GMI1000

68.563

94.886

0.651
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae strain FA1090

69.632

92.614

0.645
  recA Helicobacter pylori strain NCTC11637

61.721

95.739

0.591
  recA Helicobacter pylori 26695

61.424

95.739

0.588
  recA Streptococcus mutans UA159

58.974

99.716

0.588
  recA Streptococcus pneumoniae D39

62.848

91.761

0.577
  recA Streptococcus pneumoniae TIGR4

62.848

91.761

0.577
  recA Streptococcus pneumoniae Rx1

62.848

91.761

0.577
  recA Streptococcus pneumoniae R6

62.848

91.761

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

91.193

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.037

92.045

0.571
  recA Streptococcus mitis NCTC 12261

62.229

91.761

0.571
  recA Streptococcus mitis SK321

62.229

91.761

0.571
  recA Streptococcus pyogenes NZ131

61.846

92.33

0.571
  recA Lactococcus lactis subsp. cremoris KW2

61.92

91.761

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.06

94.602

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

92.33

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

91.193

0.557