Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QVG61_RS09515 Genome accession   NZ_CP128988
Coordinates   2058836..2059879 (-) Length   347 a.a.
NCBI ID   WP_289932763.1    Uniprot ID   -
Organism   Thiohalobacter sp. IOR34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2053836..2064879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVG61_RS09500 (QVG61_09500) - 2054120..2055349 (-) 1230 WP_289930395.1 aspartate kinase -
  QVG61_RS09505 (QVG61_09505) alaS 2055451..2058084 (-) 2634 WP_289930396.1 alanine--tRNA ligase -
  QVG61_RS09510 (QVG61_09510) - 2058153..2058626 (-) 474 WP_289930397.1 regulatory protein RecX -
  QVG61_RS09515 (QVG61_09515) recA 2058836..2059879 (-) 1044 WP_289932763.1 recombinase RecA Machinery gene
  QVG61_RS09520 (QVG61_09520) thpR 2059991..2060539 (-) 549 WP_289930398.1 RNA 2',3'-cyclic phosphodiesterase -
  QVG61_RS09525 (QVG61_09525) - 2060532..2061038 (-) 507 WP_289930399.1 nicotinamide-nucleotide amidohydrolase family protein -
  QVG61_RS09530 (QVG61_09530) - 2061090..2061470 (-) 381 WP_289930400.1 PilZ domain-containing protein -
  QVG61_RS09535 (QVG61_09535) mutS 2061484..2064063 (+) 2580 WP_289930401.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37102.46 Da        Isoelectric Point: 4.8094

>NTDB_id=850224 QVG61_RS09515 WP_289932763.1 2058836..2059879(-) (recA) [Thiohalobacter sp. IOR34]
MDENKRKALGAALSQIEKQFGKGAVMRMGDVGAVRDVEAISTGSLTLDVALGIGGLPAGRVVEIYGPESSGKTTLTLQVI
AECQKKGGTAAFVDAEHALDPTYAEKLGVNIDDLLVSQPDTGEQALEITDMLVRSGAVDVVVVDSVAALTPKAEIEGEMG
DSHVGLQARLMSQALRKLTGNIKRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKKADEVVGN
QTRVKVVKNKMAPPFKQAEFEILYGEGISREGELIDLGVAEGIVDKSGAWYSYQGERIGQGKENVRNFLKENPDIAAEIE
AQIRAKLLVTAPPADELEEAVPPEALN

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=850224 QVG61_RS09515 WP_289932763.1 2058836..2059879(-) (recA) [Thiohalobacter sp. IOR34]
ATGGACGAGAACAAGCGCAAGGCACTGGGTGCCGCACTGAGCCAGATCGAGAAGCAGTTCGGCAAGGGCGCCGTGATGCG
CATGGGCGATGTCGGCGCGGTGCGCGACGTGGAGGCGATCTCCACCGGTTCGCTGACCCTCGACGTGGCGCTGGGCATCG
GCGGCCTGCCCGCCGGCCGGGTGGTGGAGATCTACGGACCGGAGTCCTCCGGCAAGACCACCCTGACCCTGCAGGTGATC
GCCGAGTGCCAGAAAAAGGGCGGCACCGCCGCTTTCGTCGACGCCGAACACGCCCTGGATCCGACCTATGCCGAGAAGCT
GGGGGTCAACATCGACGATCTGCTGGTCTCCCAGCCGGACACCGGCGAGCAGGCCCTGGAGATCACCGACATGCTGGTGC
GTTCCGGCGCCGTGGACGTGGTGGTGGTCGACTCGGTGGCGGCGCTCACTCCCAAGGCCGAGATCGAGGGTGAGATGGGC
GATTCGCACGTCGGTCTGCAGGCACGGCTGATGTCCCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCGCTCCAACAC
CCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGCTCGCCGGAGACCACCACCGGCGGCAACG
CCCTCAAGTTCTATTCCTCGGTGCGCCTGGACATCCGCCGCATCGGTGCCATCAAGAAGGCCGACGAGGTGGTGGGCAAC
CAGACCCGGGTCAAGGTGGTGAAGAACAAGATGGCCCCCCCCTTCAAGCAGGCCGAGTTCGAAATCCTCTATGGCGAGGG
CATCTCCCGCGAGGGCGAGCTGATCGATCTTGGCGTGGCCGAGGGCATCGTCGACAAGTCCGGTGCCTGGTATAGCTACC
AGGGTGAGCGTATCGGCCAGGGCAAGGAAAACGTCCGTAACTTCCTCAAGGAGAATCCGGACATCGCTGCCGAGATCGAG
GCCCAGATCCGCGCCAAGCTGCTGGTTACGGCACCGCCGGCGGACGAGCTGGAAGAGGCGGTTCCGCCAGAGGCCCTGAA
CTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

76.879

99.712

0.767
  recA Acinetobacter baumannii D1279779

74.64

100

0.746
  recA Acinetobacter baylyi ADP1

75.51

98.847

0.746
  recA Vibrio cholerae strain A1552

71.105

100

0.723
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.105

100

0.723
  recA Neisseria gonorrhoeae strain FA1090

71.552

100

0.718
  recA Neisseria gonorrhoeae MS11

71.552

100

0.718
  recA Neisseria gonorrhoeae MS11

71.552

100

0.718
  recA Ralstonia pseudosolanacearum GMI1000

75.767

93.948

0.712
  recA Glaesserella parasuis strain SC1401

70.769

93.66

0.663
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.988

99.135

0.654
  recA Bacillus subtilis subsp. subtilis str. 168

67.913

92.507

0.628
  recA Helicobacter pylori strain NCTC11637

66.462

93.66

0.622
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.955

95.389

0.62
  recA Helicobacter pylori 26695

65.846

93.66

0.617
  recA Latilactobacillus sakei subsp. sakei 23K

62.388

96.542

0.602
  recA Streptococcus mutans UA159

62.195

94.524

0.588
  recA Streptococcus pyogenes NZ131

61.094

94.813

0.579
  recA Streptococcus mitis SK321

61.162

94.236

0.576
  recA Streptococcus mitis NCTC 12261

61.162

94.236

0.576
  recA Streptococcus pneumoniae Rx1

61.162

94.236

0.576
  recA Streptococcus pneumoniae D39

61.162

94.236

0.576
  recA Streptococcus pneumoniae R6

61.162

94.236

0.576
  recA Streptococcus pneumoniae TIGR4

61.162

94.236

0.576
  recA Lactococcus lactis subsp. cremoris KW2

60.923

93.66

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.509

93.948

0.559