Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QU661_RS04075 Genome accession   NZ_CP128647
Coordinates   870491..871564 (+) Length   357 a.a.
NCBI ID   WP_304989012.1    Uniprot ID   -
Organism   Mogibacterium neglectum strain ATCC 700924     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 865491..876564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU661_RS04060 (QU661_04065) rimO 867011..868336 (+) 1326 WP_304990439.1 30S ribosomal protein S12 methylthiotransferase RimO -
  QU661_RS04065 (QU661_04070) pgsA 868337..868867 (+) 531 WP_304990440.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QU661_RS04070 (QU661_04075) - 868998..870248 (+) 1251 WP_304989011.1 competence/damage-inducible protein A -
  QU661_RS04075 (QU661_04080) recA 870491..871564 (+) 1074 WP_304989012.1 recombinase RecA Machinery gene
  QU661_RS04080 (QU661_04085) rplU 871700..872005 (+) 306 Protein_803 50S ribosomal protein L21 -
  QU661_RS04085 (QU661_04090) rpmA 872211..872471 (+) 261 WP_106056863.1 50S ribosomal protein L27 -
  QU661_RS04090 (QU661_04095) obgE 872523..873809 (+) 1287 WP_304989013.1 GTPase ObgE -
  QU661_RS04095 (QU661_04100) - 874163..874795 (+) 633 WP_304989014.1 helix-hairpin-helix domain-containing protein -
  QU661_RS04100 (QU661_04105) - 874821..875453 (+) 633 WP_304989015.1 sporulation initiation factor Spo0A C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38323.80 Da        Isoelectric Point: 5.0803

>NTDB_id=849471 QU661_RS04075 WP_304989012.1 870491..871564(+) (recA) [Mogibacterium neglectum strain ATCC 700924]
MAVKSSKDKSIIGNVSDKEKALEHALDEIQKAFGKGAVMKLGDEGLHNNIEGISTGSISLDVATGIGGVPRGRIVEIYGP
ESSGKTTLTLHCIAEAQKAGGKAAFIDAEHALDPVYAKNLGVDVDDLLVSQPDTGEQALEICDMLARSGAIDLIVIDSVA
ALVPKAEIQGDMGDSHVGLQARLMSQALRKIAGTVNKTNTCVIFINQLREKIGIMFGNPETTTGGRALKFYASMRLDVRR
ADSIKRGDETIGNRTKVKIVKNKVAPPFKIAEFDIMYGEGISIAGDVLDTATAMKFIDKAGSWYSYEGERIGQGRENVKE
FLISHPEILENLKAKIMDAIHGSDEEEVKVDEDGVVI

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=849471 QU661_RS04075 WP_304989012.1 870491..871564(+) (recA) [Mogibacterium neglectum strain ATCC 700924]
ATGGCAGTTAAGTCAAGTAAAGACAAGAGTATAATCGGTAATGTTAGTGATAAAGAAAAGGCTCTTGAACATGCTTTAGA
TGAGATTCAGAAGGCATTCGGCAAAGGTGCAGTCATGAAGCTTGGAGATGAAGGGCTTCATAATAACATTGAAGGAATTT
CTACTGGGTCTATATCTCTAGATGTTGCTACTGGTATTGGTGGTGTCCCACGTGGACGTATTGTTGAGATTTACGGACCT
GAATCTTCAGGAAAGACCACTCTTACATTGCACTGTATCGCAGAAGCACAGAAGGCTGGCGGTAAGGCAGCTTTTATCGA
TGCTGAACATGCTCTGGATCCTGTTTATGCAAAGAATTTAGGTGTAGATGTAGATGACCTTCTAGTATCGCAGCCTGATA
CAGGAGAGCAGGCGCTTGAGATTTGCGATATGCTTGCAAGAAGTGGAGCTATTGATCTTATAGTAATTGATTCTGTAGCT
GCACTAGTTCCTAAAGCAGAAATTCAAGGCGATATGGGTGACTCGCATGTTGGTCTTCAGGCAAGACTCATGTCACAAGC
TCTGAGGAAGATTGCCGGAACCGTCAACAAGACTAATACATGTGTTATTTTTATCAATCAGCTTCGTGAGAAAATTGGGA
TTATGTTTGGTAATCCAGAGACAACTACAGGAGGAAGAGCATTAAAGTTCTATGCCAGTATGCGACTTGATGTAAGACGT
GCTGATTCTATCAAGCGTGGTGATGAGACAATTGGTAATAGAACCAAAGTTAAAATTGTAAAAAATAAAGTAGCGCCCCC
ATTCAAAATAGCGGAATTCGATATAATGTATGGAGAAGGAATTTCTATTGCAGGAGATGTACTAGATACTGCGACCGCTA
TGAAATTTATTGATAAAGCCGGTTCATGGTATAGCTATGAAGGTGAAAGAATAGGTCAAGGTCGTGAAAATGTAAAAGAA
TTCCTCATATCCCATCCGGAAATCCTTGAAAATCTAAAGGCTAAAATTATGGATGCAATTCATGGGAGTGATGAAGAAGA
GGTTAAGGTTGATGAAGATGGAGTTGTGATCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

63.717

94.958

0.605
  recA Bacillus subtilis subsp. subtilis str. 168

62.865

95.798

0.602
  recA Acinetobacter baylyi ADP1

62.757

95.518

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.314

94.678

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.545

92.437

0.597
  recA Neisseria gonorrhoeae MS11

65.938

89.636

0.591
  recA Neisseria gonorrhoeae MS11

65.938

89.636

0.591
  recA Neisseria gonorrhoeae strain FA1090

65.938

89.636

0.591
  recA Streptococcus mutans UA159

61.584

95.518

0.588
  recA Acinetobacter baumannii D1279779

61.765

95.238

0.588
  recA Helicobacter pylori 26695

63.142

92.717

0.585
  recA Helicobacter pylori strain NCTC11637

62.84

92.717

0.583
  recA Latilactobacillus sakei subsp. sakei 23K

61.357

94.958

0.583
  recA Streptococcus pyogenes NZ131

60.997

95.518

0.583
  recA Streptococcus pneumoniae Rx1

61.424

94.398

0.58
  recA Streptococcus pneumoniae D39

61.424

94.398

0.58
  recA Streptococcus pneumoniae R6

61.424

94.398

0.58
  recA Streptococcus pneumoniae TIGR4

61.424

94.398

0.58
  recA Streptococcus mitis NCTC 12261

60.174

96.359

0.58
  recA Streptococcus mitis SK321

59.884

96.359

0.577
  recA Ralstonia pseudosolanacearum GMI1000

66.129

86.835

0.574
  recA Pseudomonas stutzeri DSM 10701

63.75

89.636

0.571
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.346

90.756

0.566
  recA Vibrio cholerae strain A1552

62.346

90.756

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.261

96.639

0.563
  recA Lactococcus lactis subsp. cremoris KW2

59.467

94.678

0.563