Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NK8_RS02590 Genome accession   NZ_AP024322
Coordinates   549057..550127 (+) Length   356 a.a.
NCBI ID   WP_162064951.1    Uniprot ID   -
Organism   Caballeronia sp. NK8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 544057..555127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NK8_RS02575 (NK8_05110) - 544558..546216 (-) 1659 WP_061172887.1 MFS transporter -
  NK8_RS02580 (NK8_05120) - 546445..548028 (-) 1584 WP_162064949.1 sensor histidine kinase -
  NK8_RS02585 (NK8_05130) - 548034..548771 (-) 738 WP_162064950.1 response regulator transcription factor -
  NK8_RS02590 (NK8_05140) recA 549057..550127 (+) 1071 WP_162064951.1 recombinase RecA Machinery gene
  NK8_RS02595 (NK8_05150) recX 550147..551127 (+) 981 WP_213227255.1 recombination regulator RecX -
  NK8_RS02600 (NK8_05160) - 551245..551895 (+) 651 WP_162064953.1 DUF2889 domain-containing protein -
  NK8_RS02605 (NK8_05170) sucC 551989..553170 (+) 1182 WP_353622644.1 ADP-forming succinate--CoA ligase subunit beta -
  NK8_RS02610 (NK8_05180) sucD 553267..554148 (+) 882 WP_035497975.1 succinate--CoA ligase subunit alpha -
  NK8_RS02615 (NK8_05190) - 554285..554995 (+) 711 WP_162064955.1 TerC family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37887.39 Da        Isoelectric Point: 4.9608

>NTDB_id=84798 NK8_RS02590 WP_162064951.1 549057..550127(+) (recA) [Caballeronia sp. NK8]
MEESKKGPAGMTADKSKALAAALSQIEKQFGKGSIMRLGAGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESS
GKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYAGKLGVNVQELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALV
PKAEIEGEMGDSLPGLQARLMSQALRKLTGSIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGS
IKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKLVDKAGAWYSYNGDRIGQGKDNAREFLR
ENPDIAREIENKIRESLGVAAMGEAVVAGADAADAE

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=84798 NK8_RS02590 WP_162064951.1 549057..550127(+) (recA) [Caballeronia sp. NK8]
ATGGAAGAAAGCAAGAAAGGCCCGGCTGGAATGACTGCGGACAAGAGCAAGGCCCTGGCCGCCGCGCTCTCGCAGATCGA
AAAGCAATTCGGCAAAGGGTCGATCATGCGGCTCGGCGCAGGTGAGGCGGTCGAAGACATTCAGGTGGTGTCCACCGGTT
CGCTCGGACTGGACATCGCGCTCGGCGTCGGCGGTCTGCCGCGCGGGCGTGTCGTGGAAATCTACGGTCCCGAGTCGTCG
GGCAAGACCACGCTCACGTTGCAGGTGATCGCGGAGATGCAGAAGCTCGGCGGCACGGCGGCGTTCATCGACGCGGAACA
CGCGCTCGACGTGCAATACGCGGGCAAGCTCGGCGTGAACGTGCAGGAATTGCTGATCTCGCAGCCGGACACGGGCGAGC
AGGCGCTGGAAATCACGGACGCGCTGGTGCGCTCCGGTTCCATCGACATGATCGTCATCGACTCGGTCGCGGCGCTCGTG
CCGAAGGCGGAAATCGAAGGCGAAATGGGCGACTCGCTGCCGGGTCTGCAGGCGCGTCTGATGTCGCAGGCGCTGCGCAA
GCTCACCGGCTCGATCAAGCGCACGAACTGCCTCGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCG
GCAATCCGGAAACCACCACGGGCGGCAACGCGCTCAAGTTCTATTCGTCGGTGCGTCTGGATATCCGCCGTATCGGTTCG
ATCAAGAAGAACGACGAAGTCATCGGCAACGAGACGCGCGTGAAGGTCGTGAAGAACAAGGTGTCGCCGCCGTTCCGCGA
GGCCATCTTCGACATCCTTTATGGCGAAGGCATCTCGCGTCAGGGCGAAATCATCGATCTGGGCGTGCAGGCGAAGCTGG
TCGACAAGGCGGGCGCCTGGTACAGCTACAACGGCGATCGCATCGGTCAGGGCAAGGACAACGCGCGCGAATTCCTGCGC
GAGAATCCGGACATCGCACGCGAGATCGAGAACAAGATCCGCGAATCGCTGGGCGTGGCCGCGATGGGCGAGGCCGTCGT
CGCGGGTGCGGACGCAGCCGACGCCGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.908

97.753

0.82
  recA Pseudomonas stutzeri DSM 10701

71.758

97.472

0.699
  recA Neisseria gonorrhoeae MS11

74.468

92.416

0.688
  recA Neisseria gonorrhoeae MS11

74.468

92.416

0.688
  recA Neisseria gonorrhoeae strain FA1090

74.468

92.416

0.688
  recA Acinetobacter baylyi ADP1

73.7

91.854

0.677
  recA Glaesserella parasuis strain SC1401

69.477

96.629

0.671
  recA Acinetobacter baumannii D1279779

72.477

91.854

0.666
  recA Vibrio cholerae strain A1552

72.171

91.854

0.663
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.171

91.854

0.663
  recA Bacillus subtilis subsp. subtilis str. 168

66.055

91.854

0.607
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.35

92.416

0.604
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.264

93.539

0.601
  recA Helicobacter pylori 26695

65.031

91.573

0.596
  recA Helicobacter pylori strain NCTC11637

64.724

91.573

0.593
  recA Latilactobacillus sakei subsp. sakei 23K

61.446

93.258

0.573
  recA Streptococcus mutans UA159

61.212

92.697

0.567
  recA Streptococcus mitis NCTC 12261

60.121

92.978

0.559
  recA Streptococcus pneumoniae Rx1

59.819

92.978

0.556
  recA Streptococcus mitis SK321

59.819

92.978

0.556
  recA Streptococcus pneumoniae D39

59.819

92.978

0.556
  recA Streptococcus pneumoniae R6

59.819

92.978

0.556
  recA Streptococcus pneumoniae TIGR4

59.819

92.978

0.556
  recA Lactococcus lactis subsp. cremoris KW2

59.459

93.539

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

90.169

0.551
  recA Streptococcus pyogenes NZ131

59.574

92.416

0.551

Multiple sequence alignment