Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ikematsu_RS00405 Genome accession   NZ_AP024320
Coordinates   63204..64265 (-) Length   353 a.a.
NCBI ID   WP_204023320.1    Uniprot ID   -
Organism   Limosilactobacillus fermentum strain ike38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 58204..69265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ikematsu_RS00395 (ikematsu_00590) mutS 58514..61156 (-) 2643 WP_204023315.1 DNA mismatch repair protein MutS -
  ikematsu_RS00400 (ikematsu_00600) rny 61250..62809 (-) 1560 WP_012390969.1 ribonuclease Y -
  ikematsu_RS00405 (ikematsu_00610) recA 63204..64265 (-) 1062 WP_204023320.1 recombinase RecA Machinery gene
  ikematsu_RS00410 (ikematsu_00620) - 64359..65603 (-) 1245 WP_003682806.1 competence/damage-inducible protein A -
  ikematsu_RS00415 (ikematsu_00630) pgsA 65680..66264 (-) 585 WP_204023323.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ikematsu_RS00420 (ikematsu_00640) - 66280..67284 (-) 1005 WP_204023326.1 RodZ domain-containing protein -
  ikematsu_RS00425 (ikematsu_00650) - 67381..68682 (-) 1302 WP_204023329.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38140.30 Da        Isoelectric Point: 5.2119

>NTDB_id=84778 ikematsu_RS00405 WP_204023320.1 63204..64265(-) (recA) [Limosilactobacillus fermentum strain ike38]
MADQRKAALDNALRKIEKNFGKGSIMRMGDAADTKIATISSGSLAIDEALGVGGYPRGRIIEMYGPESSGKTTVALHAVA
EVQRRGGTAAYIDAENALDPQYATALGVQINDLLLSQPDTGEQGLEIADALIASGAVDIVVVDSVAALVPRAEIEGEMGD
THVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRMEIRRGEQLKNGTDVIGNR
AKIKVVKNKVAPPFRKAEVDIMYGEGISKTGELLDMAVEKDLVNKSGAWYSYGNERIGQGRENAKQWFADHEDAMNELMN
KVRVAYGMEPDEAPATKEGEPQQETIKEASSDK

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=84778 ikematsu_RS00405 WP_204023320.1 63204..64265(-) (recA) [Limosilactobacillus fermentum strain ike38]
TTGGCAGATCAACGAAAAGCAGCCTTAGATAACGCCCTGCGTAAGATTGAAAAGAACTTTGGGAAGGGTTCGATCATGCG
GATGGGTGACGCCGCCGACACCAAGATTGCAACCATTTCCAGTGGCTCCTTAGCCATTGACGAAGCCCTCGGTGTAGGGG
GGTACCCACGGGGCCGAATCATTGAAATGTACGGTCCGGAAAGTTCCGGGAAGACGACCGTCGCTCTCCACGCCGTCGCT
GAAGTGCAACGCCGTGGGGGGACGGCCGCCTACATCGACGCCGAAAACGCCCTCGATCCCCAGTACGCTACCGCCCTGGG
GGTTCAAATTAACGACTTGCTCTTGTCCCAACCAGACACCGGTGAACAGGGGTTGGAAATTGCCGACGCCCTGATCGCTT
CGGGAGCCGTCGACATCGTGGTGGTTGACTCCGTGGCCGCCCTGGTTCCCCGGGCCGAAATCGAAGGGGAAATGGGGGAC
ACCCACGTAGGGTTACAGGCCCGCTTGATGTCCCAAGCCCTGCGGAAGCTTTCCGGGGAAATCAACAAGACCAAGACGAT
CGCCATCTTCATCAACCAAATCCGGGAAAAGGTGGGGGTGATGTTTGGGAACCCGGAAACCACCCCTGGTGGTCGGGCCC
TGAAGTTCTACTCAACCATTCGGATGGAAATCCGGCGCGGTGAACAACTGAAGAACGGGACCGATGTGATCGGGAACCGG
GCCAAGATTAAGGTCGTGAAGAACAAGGTGGCACCGCCGTTCCGCAAGGCCGAAGTAGACATCATGTATGGGGAAGGGAT
CTCCAAGACGGGGGAACTGCTCGATATGGCCGTCGAAAAGGACCTGGTCAACAAGTCCGGGGCCTGGTATTCTTATGGTA
ACGAACGGATTGGCCAAGGGCGTGAAAACGCCAAGCAGTGGTTTGCGGACCACGAAGACGCCATGAACGAGCTGATGAAC
AAGGTGCGGGTGGCCTACGGGATGGAACCGGACGAAGCGCCGGCCACCAAGGAAGGCGAACCGCAACAAGAAACGATTAA
AGAAGCATCGAGTGACAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

81.176

96.317

0.782
  recA Bacillus subtilis subsp. subtilis str. 168

74.772

93.201

0.697
  recA Streptococcus mitis SK321

66.667

97.734

0.652
  recA Streptococcus mutans UA159

64.146

100

0.649
  recA Streptococcus mitis NCTC 12261

66.377

97.734

0.649
  recA Streptococcus pyogenes NZ131

68.278

93.768

0.64
  recA Streptococcus pneumoniae Rx1

68.085

93.201

0.635
  recA Streptococcus pneumoniae D39

68.085

93.201

0.635
  recA Streptococcus pneumoniae R6

68.085

93.201

0.635
  recA Streptococcus pneumoniae TIGR4

68.085

93.201

0.635
  recA Lactococcus lactis subsp. cremoris KW2

66.566

94.051

0.626
  recA Neisseria gonorrhoeae strain FA1090

60.909

93.484

0.569
  recA Neisseria gonorrhoeae MS11

60.909

93.484

0.569
  recA Neisseria gonorrhoeae MS11

60.909

93.484

0.569
  recA Ralstonia pseudosolanacearum GMI1000

63.492

89.235

0.567
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.939

92.635

0.555
  recA Helicobacter pylori 26695

57.27

95.467

0.547
  recA Helicobacter pylori strain NCTC11637

57.27

95.467

0.547
  recA Pseudomonas stutzeri DSM 10701

59.133

91.501

0.541
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.824

91.501

0.538
  recA Vibrio cholerae strain A1552

58.824

91.501

0.538
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.273

93.484

0.535
  recA Glaesserella parasuis strain SC1401

57.447

93.201

0.535
  recA Acinetobacter baumannii D1279779

57.895

91.501

0.53
  recA Acinetobacter baylyi ADP1

57.895

91.501

0.53
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.923

92.068

0.524

Multiple sequence alignment