Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QUC20_RS04965 Genome accession   NZ_CP128474
Coordinates   1059405..1060457 (+) Length   350 a.a.
NCBI ID   WP_289331117.1    Uniprot ID   -
Organism   Microbacterium arborescens strain SSF12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1054405..1065457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUC20_RS04940 (QUC20_04940) - 1054557..1057277 (+) 2721 WP_120263114.1 DNA translocase FtsK -
  QUC20_RS04945 (QUC20_04945) pgsA 1057294..1057866 (+) 573 WP_120263113.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QUC20_RS04950 (QUC20_04950) - 1057863..1058408 (+) 546 WP_120263112.1 CinA family protein -
  QUC20_RS04955 (QUC20_04955) - 1058566..1058886 (+) 321 WP_120263111.1 helix-turn-helix transcriptional regulator -
  QUC20_RS04960 (QUC20_04960) - 1058902..1059126 (+) 225 WP_120263110.1 DUF3046 domain-containing protein -
  QUC20_RS04965 (QUC20_04965) recA 1059405..1060457 (+) 1053 WP_289331117.1 recombinase RecA Machinery gene
  QUC20_RS04970 (QUC20_04970) - 1060814..1061158 (+) 345 WP_289331118.1 regulatory protein RecX -
  QUC20_RS04975 (QUC20_04975) - 1061170..1063752 (-) 2583 WP_289331119.1 LuxR C-terminal-related transcriptional regulator -
  QUC20_RS04980 (QUC20_04980) - 1064045..1064734 (+) 690 WP_289331120.1 SipW-dependent-type signal peptide-containing protein -
  QUC20_RS04985 (QUC20_04985) - 1064739..1065362 (+) 624 WP_289331121.1 signal peptidase I -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37231.57 Da        Isoelectric Point: 6.1666

>NTDB_id=847586 QUC20_RS04965 WP_289331117.1 1059405..1060457(+) (recA) [Microbacterium arborescens strain SSF12]
MPSPADREKALESALAQIDRQFGKGSVMRLGSDERAPVEVIPTGSIALDVALGIGGLPRGRIIEIYGPESSGKTTLTLHA
IANAQRAGGIAAFIDAEHALDPSYAQKLGVDIDALLVSQPDTGEQALEIADMLIRSGAIDLVVIDSVAALVPEAEIKGEM
GDSHVGLQARLMSQALRKLTGGLNQTKTTAIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVG
NRTRVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDFGVEHGIVKKSGAWYTYDGEQLGQGKENARNFLLKNADVAVDI
ENKIKQKLDIGQPAAPAPAAADDLAARRPA

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=847586 QUC20_RS04965 WP_289331117.1 1059405..1060457(+) (recA) [Microbacterium arborescens strain SSF12]
ATGCCATCACCCGCTGACCGTGAGAAGGCCCTCGAATCGGCCCTCGCCCAGATCGACCGTCAGTTCGGGAAGGGCTCGGT
CATGCGCCTGGGCTCCGACGAACGCGCACCGGTCGAGGTCATTCCCACGGGGTCCATCGCCCTCGACGTGGCGCTCGGCA
TCGGAGGGCTCCCGCGTGGCCGAATCATCGAGATCTACGGTCCGGAGTCGTCGGGTAAGACGACGCTGACCCTCCACGCC
ATCGCGAACGCGCAGCGCGCGGGTGGTATCGCCGCGTTCATCGACGCCGAGCACGCGCTCGACCCGTCTTACGCGCAGAA
GCTCGGCGTCGACATCGACGCGCTCCTGGTCTCCCAGCCCGACACGGGTGAGCAGGCGCTCGAGATCGCCGACATGCTGA
TCCGCTCCGGCGCGATCGACCTCGTGGTCATCGACTCCGTCGCCGCGCTCGTTCCCGAGGCCGAGATCAAGGGCGAGATG
GGCGACTCGCACGTCGGCCTGCAGGCGCGTCTCATGTCGCAGGCCCTTCGAAAGCTCACGGGTGGTCTGAACCAGACCAA
GACGACCGCCATTTTCATCAACCAGCTGCGCGAGAAGATCGGTGTCTTCTTCGGCTCGCCCGAGACGACGGCGGGCGGTA
AGGCGCTGAAGTTCTACGCATCGGTCCGCCTCGACATCCGCCGCATCGAGACCCTCAAGGACGGAACCGAGGCTGTCGGT
AACCGCACGCGCGTGAAGGTCGTCAAGAACAAGATGGCGCCGCCCTTCAAGCAAGCCGAGTTCGACATCCTCTACGGGGT
AGGAATCTCGCGCGAGGGAAGCCTCATCGACTTCGGCGTCGAGCACGGCATCGTCAAGAAGTCGGGTGCCTGGTACACCT
ACGACGGCGAGCAGCTCGGGCAGGGCAAGGAGAACGCGCGCAACTTCCTGCTCAAGAACGCCGACGTCGCCGTCGACATC
GAGAACAAGATCAAGCAGAAGCTCGATATCGGTCAGCCCGCTGCCCCGGCTCCGGCCGCAGCAGACGACCTCGCGGCCCG
CCGCCCGGCGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

65

97.143

0.631
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.035

97.714

0.626
  recA Vibrio cholerae strain A1552

64.035

97.714

0.626
  recA Acinetobacter baumannii D1279779

67.183

92.286

0.62
  recA Bacillus subtilis subsp. subtilis str. 168

67.391

92

0.62
  recA Ralstonia pseudosolanacearum GMI1000

68.69

89.429

0.614
  recA Acinetobacter baylyi ADP1

66.563

92.286

0.614
  recA Neisseria gonorrhoeae MS11

66.355

91.714

0.609
  recA Neisseria gonorrhoeae MS11

66.355

91.714

0.609
  recA Neisseria gonorrhoeae strain FA1090

66.355

91.714

0.609
  recA Streptococcus mitis SK321

60.694

98.857

0.6
  recA Helicobacter pylori 26695

61.357

96.857

0.594
  recA Helicobacter pylori strain NCTC11637

61.357

96.857

0.594
  recA Latilactobacillus sakei subsp. sakei 23K

61.357

96.857

0.594
  recA Lactococcus lactis subsp. cremoris KW2

64

92.857

0.594
  recA Glaesserella parasuis strain SC1401

61.176

97.143

0.594
  recA Streptococcus pneumoniae R6

62.805

93.714

0.589
  recA Streptococcus pneumoniae Rx1

62.805

93.714

0.589
  recA Streptococcus pneumoniae D39

62.805

93.714

0.589
  recA Streptococcus pneumoniae TIGR4

62.805

93.714

0.589
  recA Streptococcus mitis NCTC 12261

63.19

93.143

0.589
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.883

93.143

0.586
  recA Streptococcus mutans UA159

62.963

92.571

0.583
  recA Streptococcus pyogenes NZ131

62.195

93.714

0.583
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.702

94

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.75

91.429

0.537