Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QSV55_RS05230 Genome accession   NZ_CP128470
Coordinates   954242..955318 (+) Length   358 a.a.
NCBI ID   WP_289650968.1    Uniprot ID   -
Organism   Macrococcus bovicus strain LI0213     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 949242..960318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSV55_RS05205 (QSV55_05215) - 949869..951140 (+) 1272 WP_289650964.1 pitrilysin family protein -
  QSV55_RS05210 (QSV55_05220) - 951133..951819 (+) 687 WP_289650965.1 SDR family NAD(P)-dependent oxidoreductase -
  QSV55_RS05215 (QSV55_05225) - 951827..952612 (+) 786 WP_208001529.1 YmfK family protein -
  QSV55_RS05220 (QSV55_05230) - 952627..953442 (+) 816 WP_289650966.1 helix-turn-helix domain-containing protein -
  QSV55_RS05225 (QSV55_05235) pgsA 953457..954026 (+) 570 WP_289650967.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QSV55_RS05230 (QSV55_05240) recA 954242..955318 (+) 1077 WP_289650968.1 recombinase RecA Machinery gene
  QSV55_RS05235 (QSV55_05245) rny 955489..957042 (+) 1554 WP_289650969.1 ribonuclease Y -
  QSV55_RS05240 (QSV55_05250) - 957179..957403 (+) 225 WP_289650970.1 hypothetical protein -
  QSV55_RS05245 (QSV55_05255) - 957509..958075 (-) 567 WP_289650971.1 hypothetical protein -
  QSV55_RS05250 (QSV55_05260) - 958253..959050 (+) 798 WP_289650972.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38825.06 Da        Isoelectric Point: 4.8090

>NTDB_id=847564 QSV55_RS05230 WP_289650968.1 954242..955318(+) (recA) [Macrococcus bovicus strain LI0213]
MSERQKALDTVIKNMEKSFGKGAVMKLGESTARNVSTVSSGSITIDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIAE
VQAQGGTAAFIDAEHALDPVYAKNLGVDTENLYLSQPDHGEQGLEIAEAFVRSGAIDIIVIDSVAALTPKAEIEGEMGDS
HMGLQARLMSQALRKLSGAIAKSNTIAIFINQVREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGMDVVGNRT
KIKVVKNKVAPPFKVAEVDIMYGKGISREGEIVDLGTEFEVIDKSGAWYSYNGERLGQGKENVKNYMKENPEVMAEIDRK
IRQEMGIIAPDEVTETAEKESAEPQKEEADTLFDDELV

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=847564 QSV55_RS05230 WP_289650968.1 954242..955318(+) (recA) [Macrococcus bovicus strain LI0213]
TTGAGCGAACGTCAAAAAGCACTCGATACAGTCATCAAAAATATGGAGAAATCATTCGGTAAAGGCGCGGTCATGAAGCT
CGGCGAAAGCACAGCTCGCAATGTTTCCACTGTTTCAAGTGGTTCTATTACCATCGATAATGCATTAGGAGTAGGGGGCT
ATCCTAAAGGGCGTATCATTGAGATCTACGGACCTGAAAGTTCCGGTAAAACGACCGTGGCCCTGCACGCGATCGCTGAA
GTACAGGCTCAGGGCGGAACAGCTGCATTCATCGATGCTGAGCACGCATTAGATCCTGTTTATGCGAAGAATCTGGGTGT
GGATACTGAGAATCTTTATTTATCACAGCCTGACCATGGTGAACAAGGTCTGGAAATCGCTGAAGCATTTGTTAGAAGCG
GTGCGATTGATATCATCGTTATCGATTCAGTGGCTGCCCTGACACCAAAAGCGGAGATCGAAGGAGAGATGGGTGACTCT
CATATGGGTCTGCAGGCGCGTCTGATGTCACAGGCACTGCGTAAACTTTCCGGTGCCATTGCGAAATCTAATACAATCGC
CATCTTTATCAACCAGGTCCGTGAAAAAATCGGTGTGATGTTCGGTAACCCAGAAACGACACCTGGCGGCCGTGCGCTTA
AATTCTATAGTTCAGTCCGTCTGGAAGTCCGTCGTGCGGAACAGCTGAAACAAGGCATGGACGTGGTAGGTAACCGTACA
AAGATTAAAGTCGTGAAGAACAAAGTAGCGCCACCTTTCAAAGTAGCTGAAGTTGATATCATGTACGGTAAAGGTATCTC
CCGTGAAGGTGAGATTGTAGACCTCGGTACTGAGTTTGAAGTGATTGATAAATCAGGTGCTTGGTATTCTTATAATGGCG
AGCGCTTAGGTCAGGGTAAAGAGAACGTGAAGAACTACATGAAAGAGAATCCCGAAGTCATGGCAGAGATTGACCGTAAA
ATACGTCAGGAAATGGGAATCATCGCGCCGGATGAAGTGACTGAGACAGCAGAAAAAGAATCTGCAGAACCTCAGAAAGA
AGAAGCAGATACTTTATTTGATGACGAATTAGTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.453

91.341

0.698
  recA Latilactobacillus sakei subsp. sakei 23K

69.617

94.693

0.659
  recA Streptococcus mutans UA159

63.056

100

0.634
  recA Streptococcus mitis SK321

61.602

100

0.623
  recA Streptococcus pneumoniae R6

62.89

98.603

0.62
  recA Streptococcus pneumoniae Rx1

62.89

98.603

0.62
  recA Streptococcus pneumoniae D39

62.89

98.603

0.62
  recA Streptococcus pneumoniae TIGR4

62.89

98.603

0.62
  recA Streptococcus mitis NCTC 12261

61.05

100

0.617
  recA Streptococcus pyogenes NZ131

66.768

91.62

0.612
  recA Lactococcus lactis subsp. cremoris KW2

63.988

93.855

0.601
  recA Acinetobacter baylyi ADP1

61.318

97.486

0.598
  recA Neisseria gonorrhoeae MS11

61.383

96.927

0.595
  recA Neisseria gonorrhoeae MS11

61.383

96.927

0.595
  recA Neisseria gonorrhoeae strain FA1090

61.383

96.927

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.242

94.693

0.589
  recA Vibrio cholerae strain A1552

62.242

94.693

0.589
  recA Acinetobacter baumannii D1279779

64.596

89.944

0.581
  recA Ralstonia pseudosolanacearum GMI1000

63.497

91.061

0.578
  recA Helicobacter pylori 26695

60.234

95.531

0.575
  recA Helicobacter pylori strain NCTC11637

60.234

95.531

0.575
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.769

90.782

0.57
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.515

92.179

0.567
  recA Glaesserella parasuis strain SC1401

57.803

96.648

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.875

89.385

0.553
  recA Pseudomonas stutzeri DSM 10701

60.248

89.944

0.542