Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   N7E01_RS00500 Genome accession   NZ_CP128233
Coordinates   94296..95393 (-) Length   365 a.a.
NCBI ID   WP_289174010.1    Uniprot ID   -
Organism   Neopusillimonas aromaticivorans strain CC-YST667     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 89296..100393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7E01_RS00475 (N7E01_00475) - 89924..90591 (-) 668 Protein_92 TerC family protein -
  N7E01_RS00480 (N7E01_00480) sucD 90753..91634 (-) 882 WP_289174002.1 succinate--CoA ligase subunit alpha -
  N7E01_RS00485 (N7E01_00485) sucC 91656..92816 (-) 1161 WP_289174004.1 ADP-forming succinate--CoA ligase subunit beta -
  N7E01_RS00490 (N7E01_00490) - 92872..93519 (-) 648 WP_289174006.1 DUF2889 domain-containing protein -
  N7E01_RS00495 (N7E01_00495) recX 93594..94247 (-) 654 WP_289174008.1 recombination regulator RecX -
  N7E01_RS00500 (N7E01_00500) recA 94296..95393 (-) 1098 WP_289174010.1 recombinase RecA Machinery gene
  N7E01_RS00505 (N7E01_00505) - 95911..96813 (+) 903 WP_289174012.1 recombination-associated protein RdgC -
  N7E01_RS00510 (N7E01_00510) - 96983..98278 (-) 1296 WP_289174014.1 aspartate carbamoyltransferase -
  N7E01_RS00515 (N7E01_00515) - 98500..99090 (-) 591 WP_289174016.1 hypothetical protein -
  N7E01_RS00520 (N7E01_00520) - 99236..99376 (+) 141 WP_289174018.1 hypothetical protein -
  N7E01_RS00530 (N7E01_00530) - 99593..99880 (-) 288 WP_289174020.1 type II toxin-antitoxin system RelE/ParE family toxin -
  N7E01_RS00535 (N7E01_00535) - 99877..100005 (-) 129 WP_289174021.1 hypothetical protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39277.73 Da        Isoelectric Point: 4.9553

>NTDB_id=846874 N7E01_RS00500 WP_289174010.1 94296..95393(-) (recA) [Neopusillimonas aromaticivorans strain CC-YST667]
MDVKQSKTASAERAKALSAALSQIEKQFGKGSVMRYGDNQVEHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK
TTLTLQVIAEMQKLGGTCAFIDAEHALDVQYASRLGVNLTDLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPK
AEIEGDMGDSLPGLQARLMSQALRKLTANIKRANCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIK
KGDEVVGNETRVKIVKNKVAPPFKQAEFDIMYGAGISREGEIIDLGVQAGIVDKAGAWFSYNGTRIGQGKDNVREYLKEH
PAMAIEIENRVREQMGVVARAQAQAYSESPDSPAPDEDLEGQPED

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=846874 N7E01_RS00500 WP_289174010.1 94296..95393(-) (recA) [Neopusillimonas aromaticivorans strain CC-YST667]
ATGGACGTCAAACAAAGCAAAACCGCTTCCGCAGAGCGCGCCAAGGCGCTTTCGGCGGCCCTGTCGCAAATCGAAAAGCA
ATTTGGCAAGGGTTCGGTCATGCGCTATGGCGACAACCAGGTCGAACACGATATCCAGGTGGTTTCCACTGGCTCGCTTG
GTCTTGATATCGCCTTGGGCGTCGGTGGTCTGCCGCGTGGTCGTGTTGTTGAAATCTATGGGCCTGAATCGTCCGGTAAA
ACCACGCTTACACTGCAGGTCATTGCCGAAATGCAAAAGCTCGGCGGCACCTGTGCGTTCATCGACGCCGAACATGCCCT
CGATGTTCAGTACGCCTCGCGCCTCGGGGTCAACCTTACCGACTTGCTGATCTCCCAGCCCGATACCGGCGAGCAGGCGC
TTGAAATTACCGACGCCCTGGTGCGTTCGGGCAGTGTCGACCTTATCGTTATCGACTCGGTAGCCGCTTTGGTGCCCAAG
GCCGAAATCGAAGGCGACATGGGTGACTCCTTGCCCGGCCTGCAGGCTCGCCTCATGAGTCAGGCGCTGCGCAAGCTTAC
GGCCAATATCAAGCGCGCCAACTGCATGGTCATTTTCATCAATCAAATCCGCATGAAAATCGGCGTCATGTTTGGTAACC
CTGAAACAACCACGGGTGGTAACGCGCTCAAGTTTTACTCGTCGGTACGTCTTGATATCCGTCGCATCGGTTCCATCAAA
AAGGGCGATGAGGTCGTTGGCAACGAAACCCGCGTCAAAATCGTCAAGAACAAGGTGGCGCCACCTTTCAAGCAGGCCGA
ATTCGACATCATGTACGGTGCAGGTATTTCGCGCGAAGGCGAAATCATCGATCTTGGTGTGCAGGCGGGCATCGTCGACA
AGGCTGGGGCATGGTTCAGCTACAACGGCACCCGTATTGGTCAAGGTAAAGATAATGTCCGCGAATACCTGAAAGAACAC
CCCGCCATGGCCATCGAAATCGAAAATCGTGTGCGTGAGCAAATGGGTGTGGTGGCGCGTGCGCAGGCTCAGGCGTATTC
AGAATCGCCCGACTCTCCCGCTCCCGACGAAGATCTTGAAGGCCAACCCGAAGATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.845

92.055

0.753
  recA Pseudomonas stutzeri DSM 10701

71.053

93.699

0.666
  recA Acinetobacter baylyi ADP1

70.381

93.425

0.658
  recA Neisseria gonorrhoeae MS11

68.391

95.342

0.652
  recA Neisseria gonorrhoeae MS11

68.391

95.342

0.652
  recA Neisseria gonorrhoeae strain FA1090

68.391

95.342

0.652
  recA Acinetobacter baumannii D1279779

72.755

88.493

0.644
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.207

88.493

0.63
  recA Vibrio cholerae strain A1552

71.207

88.493

0.63
  recA Glaesserella parasuis strain SC1401

70.679

88.767

0.627
  recA Helicobacter pylori 26695

62.286

95.89

0.597
  recA Helicobacter pylori strain NCTC11637

62

95.89

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.69

92.055

0.586
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.031

89.315

0.581
  recA Latilactobacillus sakei subsp. sakei 23K

58.889

98.63

0.581
  recA Bacillus subtilis subsp. subtilis str. 168

63.914

89.589

0.573
  recA Streptococcus pneumoniae R6

58.101

98.082

0.57
  recA Streptococcus pneumoniae TIGR4

58.101

98.082

0.57
  recA Streptococcus pneumoniae Rx1

58.101

98.082

0.57
  recA Streptococcus pneumoniae D39

58.101

98.082

0.57
  recA Streptococcus pyogenes NZ131

60.597

91.781

0.556
  recA Streptococcus mitis SK321

59.941

92.329

0.553
  recA Streptococcus mitis NCTC 12261

59.941

92.329

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.154

89.041

0.553
  recA Streptococcus mutans UA159

59.644

92.329

0.551
  recA Lactococcus lactis subsp. cremoris KW2

58.457

92.329

0.54