Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QQ987_RS15380 Genome accession   NZ_CP128172
Coordinates   3130939..3132012 (+) Length   357 a.a.
NCBI ID   WP_021244618.1    Uniprot ID   T0GQW7
Organism   Sphingobium baderi strain SC-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3125939..3137012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQ987_RS15360 (QQ987_15360) smpB 3126861..3127343 (+) 483 WP_021244614.1 SsrA-binding protein SmpB -
  QQ987_RS15365 (QQ987_15365) - 3127343..3127936 (+) 594 WP_021244615.1 DUF2062 domain-containing protein -
  QQ987_RS15370 (QQ987_15370) - 3127983..3130397 (+) 2415 WP_021244616.1 PAS domain-containing sensor histidine kinase -
  QQ987_RS15375 (QQ987_15375) - 3130480..3130839 (+) 360 WP_031290908.1 response regulator -
  QQ987_RS15380 (QQ987_15380) recA 3130939..3132012 (+) 1074 WP_021244618.1 recombinase RecA Machinery gene
  QQ987_RS15385 (QQ987_15385) - 3132400..3133179 (+) 780 WP_021244619.1 transglutaminase-like domain-containing protein -
  QQ987_RS15390 (QQ987_15390) - 3133216..3133740 (-) 525 WP_323809860.1 GNAT family N-acetyltransferase -
  QQ987_RS15395 (QQ987_15395) mtgA 3133842..3134540 (+) 699 WP_145073573.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  QQ987_RS15400 (QQ987_15400) - 3134570..3134707 (-) 138 WP_221442045.1 hypothetical protein -
  QQ987_RS15405 (QQ987_15405) - 3134921..3135427 (-) 507 WP_031290911.1 porin family protein -
  QQ987_RS15410 (QQ987_15410) - 3135708..3136433 (+) 726 WP_242003328.1 cytochrome b/b6 domain-containing protein -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38246.78 Da        Isoelectric Point: 5.3666

>NTDB_id=846447 QQ987_RS15380 WP_021244618.1 3130939..3132012(+) (recA) [Sphingobium baderi strain SC-1]
MTAMLSLIDSKKTGTMDRQKALEAALSQIDRAFGKGSAMKLGSREKMEIEAISTGSLGLDIALGIGGLPRGRVVEIYGPE
SSGKTTLALHVIAEAQKGGGVAAFVDAEHALDPGYAKKLGVDIDELIVSQPDTGEQALEIVDTLVRSNAIDVLVVDSVAA
LVPRAEIEGEMGDSHVGLQARLMSQALRKLTGSISRSRCIVIFINQVRMKIGVMYGNPETTTGGNALKFYSSVRLDIRRT
GQIKDRDDFVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGVVEKSGAWFSYDSVRIGQGRENAKTF
LKENPEMADRLERAIRGKTEEVAEGMMAGSEADDGGE

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=846447 QQ987_RS15380 WP_021244618.1 3130939..3132012(+) (recA) [Sphingobium baderi strain SC-1]
ATGACCGCAATGCTCTCACTCATCGATTCCAAGAAGACAGGGACAATGGACAGACAAAAAGCGTTGGAAGCGGCCCTTTC
CCAGATCGACCGCGCCTTTGGCAAAGGCTCGGCGATGAAGCTGGGCAGCCGCGAGAAGATGGAGATCGAAGCAATTTCGA
CCGGCTCGCTCGGCCTCGACATCGCGCTCGGCATCGGCGGCCTGCCGCGCGGGCGCGTCGTTGAAATTTACGGGCCGGAA
AGCTCGGGCAAGACCACGCTGGCGCTGCATGTCATCGCCGAAGCGCAGAAGGGCGGCGGCGTCGCGGCTTTTGTCGACGC
CGAACATGCGCTCGATCCGGGTTATGCCAAGAAGCTGGGCGTGGATATCGACGAACTGATCGTGTCGCAGCCCGATACCG
GGGAACAGGCGCTGGAGATCGTCGATACGCTGGTGCGGTCCAATGCGATCGACGTGCTGGTGGTGGACTCGGTCGCCGCG
CTGGTGCCCCGCGCGGAGATCGAAGGCGAAATGGGCGACAGCCATGTCGGCCTCCAGGCGCGCCTCATGAGCCAGGCGCT
GCGCAAGCTGACCGGCTCGATCAGCCGTTCGCGCTGCATCGTGATCTTCATCAACCAGGTACGCATGAAGATCGGCGTCA
TGTACGGGAATCCGGAAACGACGACGGGCGGCAATGCGCTCAAATTCTACTCTTCCGTCCGTCTCGACATCCGCCGCACG
GGGCAGATCAAGGATCGCGACGACTTCGTCGGCAACGCGACCCGCGTGAAGGTGGTCAAGAACAAGGTCGCTCCGCCCTT
CAAGCAGGTCGAATTCGACATCATGTATGGCGAGGGCATTTCCAAGATCGGCGAGATCCTCGATCTGGGCGTCAAGGCCG
GCGTAGTCGAAAAATCGGGCGCATGGTTCTCCTATGACTCGGTCCGCATAGGTCAGGGCCGGGAGAATGCGAAGACCTTC
CTCAAGGAAAATCCCGAAATGGCGGATCGTCTGGAAAGGGCGATCCGGGGCAAGACCGAGGAGGTCGCCGAAGGGATGAT
GGCGGGATCCGAAGCGGATGACGGCGGCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T0GQW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

67.059

95.238

0.639
  recA Neisseria gonorrhoeae MS11

68.468

93.277

0.639
  recA Neisseria gonorrhoeae strain FA1090

68.468

93.277

0.639
  recA Neisseria gonorrhoeae MS11

68.468

93.277

0.639
  recA Pseudomonas stutzeri DSM 10701

70.497

90.196

0.636
  recA Ralstonia pseudosolanacearum GMI1000

67.576

92.437

0.625
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.375

89.636

0.622
  recA Vibrio cholerae strain A1552

69.375

89.636

0.622
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.912

95.798

0.622
  recA Bacillus subtilis subsp. subtilis str. 168

68.125

89.636

0.611
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.455

92.437

0.605
  recA Acinetobacter baumannii D1279779

67.188

89.636

0.602
  recA Acinetobacter baylyi ADP1

66.875

89.636

0.599
  recA Helicobacter pylori strain NCTC11637

64.848

92.437

0.599
  recA Helicobacter pylori 26695

64.545

92.437

0.597
  recA Streptococcus mitis SK321

60.231

97.199

0.585
  recA Streptococcus pneumoniae D39

60.756

96.359

0.585
  recA Streptococcus pneumoniae TIGR4

60.756

96.359

0.585
  recA Streptococcus mitis NCTC 12261

60.756

96.359

0.585
  recA Streptococcus pneumoniae Rx1

60.756

96.359

0.585
  recA Streptococcus pneumoniae R6

60.756

96.359

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.446

92.997

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

63.438

89.636

0.569
  recA Streptococcus pyogenes NZ131

60.661

93.277

0.566
  recA Streptococcus mutans UA159

61.027

92.717

0.566
  recA Lactococcus lactis subsp. cremoris KW2

57.514

96.919

0.557