Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QRD89_RS09370 Genome accession   NZ_CP128168
Coordinates   1757606..1758649 (+) Length   347 a.a.
NCBI ID   WP_008640075.1    Uniprot ID   A0A7Z2YAE8
Organism   Halobacillus sp. ACCC02827     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1752606..1763649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD89_RS09345 (QRD89_09345) - 1753353..1753613 (+) 261 WP_008640066.1 DUF3243 domain-containing protein -
  QRD89_RS09350 (QRD89_09350) - 1753809..1754600 (+) 792 WP_008640067.1 DUF3388 domain-containing protein -
  QRD89_RS09355 (QRD89_09355) - 1754620..1755519 (+) 900 WP_008640068.1 helix-turn-helix domain-containing protein -
  QRD89_RS09360 (QRD89_09360) pgsA 1755618..1756196 (+) 579 WP_062513423.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QRD89_RS09365 (QRD89_09365) - 1756193..1757437 (+) 1245 WP_286096775.1 competence/damage-inducible protein A -
  QRD89_RS09370 (QRD89_09370) recA 1757606..1758649 (+) 1044 WP_008640075.1 recombinase RecA Machinery gene
  QRD89_RS09375 (QRD89_09375) rny 1758925..1760487 (+) 1563 WP_008640080.1 ribonuclease Y -
  QRD89_RS09380 (QRD89_09380) - 1760598..1761395 (+) 798 WP_026577438.1 TIGR00282 family metallophosphoesterase -
  QRD89_RS09385 (QRD89_09385) - 1761504..1761764 (+) 261 WP_008640081.1 stage V sporulation protein S -
  QRD89_RS09390 (QRD89_09390) tdh 1762072..1763112 (+) 1041 WP_026577437.1 L-threonine 3-dehydrogenase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37802.87 Da        Isoelectric Point: 4.8579

>NTDB_id=846389 QRD89_RS09370 WP_008640075.1 1757606..1758649(+) (recA) [Halobacillus sp. ACCC02827]
MSDRKQALDMALRQIEKQFGKGSIMKLGESAEQRVNTVSSGSLALDVALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
AQRKGGQAAFIDAEHALDPVYARALGVDIEELLLSQPDTGEQALEIAEALVRSGAVDMVVIDSVAALVPKAEIEGEMGDA
HVGLQARLMSQALRKLSGAINKSKTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMVGNKT
RLKVVKNKVAPPFKQAEVDIMYGEGISREGELIDIGTDLDLIQKSGSWYSYNEERLGQGRENAKQFLKENVEIYDEVKRL
IRDHYGMDADEPSVEAPEADSQETLDV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=846389 QRD89_RS09370 WP_008640075.1 1757606..1758649(+) (recA) [Halobacillus sp. ACCC02827]
ATGAGTGATCGTAAACAAGCATTAGATATGGCATTGCGTCAAATAGAAAAGCAGTTCGGTAAAGGTTCCATCATGAAGCT
CGGAGAAAGTGCAGAACAGCGGGTGAACACAGTATCCAGTGGCTCTCTGGCTCTTGATGTGGCGTTGGGTGTCGGTGGAT
ACCCGCGAGGTAGAATTATAGAAATATATGGACCGGAATCATCCGGTAAAACGACGGTAGCGCTTCACGCGATTGCCGAG
GCACAAAGAAAAGGCGGACAGGCAGCGTTTATCGATGCGGAGCACGCACTCGATCCCGTGTATGCAAGGGCGCTCGGGGT
AGATATTGAGGAGTTACTGCTGTCCCAGCCTGACACCGGGGAGCAGGCGCTTGAGATTGCTGAGGCGCTCGTACGAAGCG
GTGCGGTGGATATGGTTGTTATCGACTCTGTAGCCGCACTGGTCCCGAAAGCTGAGATTGAAGGAGAAATGGGAGATGCA
CACGTTGGTCTTCAGGCCCGTTTGATGTCCCAAGCACTGCGTAAGCTTTCCGGAGCTATAAATAAGTCGAAGACTACAGC
GATCTTCATTAACCAAATTCGTGAGAAAGTCGGCGTTATGTTCGGTAACCCGGAAACAACACCTGGCGGTCGTGCTCTGA
AGTTCTATTCTTCCGTGCGTTTGGAAGTTCGTCGTGCAGAAACGCTGAAACAGGGGAATGAAATGGTCGGTAACAAGACC
CGTCTGAAAGTCGTGAAGAACAAGGTGGCTCCGCCTTTCAAACAAGCAGAAGTTGATATTATGTATGGAGAGGGAATATC
CAGAGAAGGTGAACTGATCGACATCGGTACAGACCTTGATCTCATTCAAAAGAGCGGATCCTGGTATTCCTATAATGAGG
AGCGACTTGGCCAAGGTCGTGAAAATGCCAAACAGTTCCTGAAAGAAAACGTGGAAATTTACGATGAAGTAAAACGTTTG
ATTCGGGATCATTACGGAATGGATGCGGATGAACCTTCTGTTGAAGCGCCGGAAGCTGACAGTCAGGAAACGCTTGACGT
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2YAE8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.242

95.101

0.801
  recA Latilactobacillus sakei subsp. sakei 23K

72.434

98.271

0.712
  recA Streptococcus pyogenes NZ131

67.049

100

0.674
  recA Streptococcus mutans UA159

67.63

99.712

0.674
  recA Streptococcus pneumoniae Rx1

69.139

97.118

0.671
  recA Streptococcus pneumoniae R6

69.139

97.118

0.671
  recA Streptococcus pneumoniae TIGR4

69.139

97.118

0.671
  recA Streptococcus pneumoniae D39

69.139

97.118

0.671
  recA Streptococcus mitis SK321

67.847

97.695

0.663
  recA Streptococcus mitis NCTC 12261

69.697

95.101

0.663
  recA Neisseria gonorrhoeae strain FA1090

65.698

99.135

0.651
  recA Neisseria gonorrhoeae MS11

65.698

99.135

0.651
  recA Neisseria gonorrhoeae MS11

65.698

99.135

0.651
  recA Lactococcus lactis subsp. cremoris KW2

67.273

95.101

0.64
  recA Ralstonia pseudosolanacearum GMI1000

67.412

90.202

0.608
  recA Glaesserella parasuis strain SC1401

61.337

99.135

0.608
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.109

92.507

0.602
  recA Vibrio cholerae strain A1552

65.109

92.507

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.11

94.524

0.597
  recA Helicobacter pylori strain NCTC11637

60.831

97.118

0.591
  recA Helicobacter pylori 26695

60.831

97.118

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.691

94.236

0.591
  recA Pseudomonas stutzeri DSM 10701

64.062

92.219

0.591
  recA Acinetobacter baylyi ADP1

58.96

99.712

0.588
  recA Acinetobacter baumannii D1279779

62.733

92.795

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.461

91.354

0.571