Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QSG87_RS09645 Genome accession   NZ_CP127923
Coordinates   1970859..1971905 (+) Length   348 a.a.
NCBI ID   WP_087551030.1    Uniprot ID   -
Organism   Acinetobacter chinensis strain SAAc573     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1965859..1976905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG87_RS09625 (QSG87_09625) - 1967956..1968690 (-) 735 WP_317022891.1 phosphoglycerate mutase family protein -
  QSG87_RS09630 (QSG87_09630) - 1968746..1969597 (-) 852 WP_317022892.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  QSG87_RS09635 (QSG87_09635) - 1969609..1970295 (+) 687 WP_317022893.1 HAD-IA family hydrolase -
  QSG87_RS09640 (QSG87_09640) - 1970288..1970713 (+) 426 WP_317022894.1 S4 domain-containing protein -
  QSG87_RS09645 (QSG87_09645) recA 1970859..1971905 (+) 1047 WP_087551030.1 recombinase RecA Machinery gene
  QSG87_RS09650 (QSG87_09650) - 1972100..1972729 (+) 630 WP_317022895.1 regulatory protein RecX -
  QSG87_RS09660 (QSG87_09660) - 1973186..1974085 (+) 900 WP_317022896.1 tetratricopeptide repeat protein -
  QSG87_RS09665 (QSG87_09665) lpxA 1974152..1974940 (-) 789 WP_087551027.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  QSG87_RS09670 (QSG87_09670) fabZ 1974937..1975422 (-) 486 WP_171405497.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QSG87_RS09675 (QSG87_09675) lpxD 1975430..1976503 (-) 1074 WP_317022897.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37692.15 Da        Isoelectric Point: 5.0431

>NTDB_id=845242 QSG87_RS09645 WP_087551030.1 1970859..1971905(+) (recA) [Acinetobacter chinensis strain SAAc573]
MDDNKSKALNAALSQIEKQFGKNTVMRLGDNNVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
QCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDMIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGQVKEGDEIVGSE
TKVKVVKNKMAPPFREALFQILYGKGVNHLGELVDLAVAQELVQKAGAWYSYKGEKIGQGKNNVIRHLEENPQIVQELDK
AIREQLLVTANAAPAEEKDEEEPDFLDV

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=845242 QSG87_RS09645 WP_087551030.1 1970859..1971905(+) (recA) [Acinetobacter chinensis strain SAAc573]
ATGGATGATAACAAAAGTAAGGCGCTGAATGCTGCACTGAGCCAGATTGAAAAACAGTTTGGTAAAAATACAGTCATGCG
TCTTGGTGATAATAATGTACAGGCAGTTGAAGCAGTATCCACTGGTTCACTGACTCTTGATATTGCACTGGGTATTGGCG
GTCTGCCAAAAGGTCGTATTGTTGAAATCTATGGCCCTGAATCTTCAGGTAAAACCACGATGACCCTCCAGGCCATTGCT
CAGTGTCAGAAAGCTGGTGGCACCTGTGCATTCATTGATGCTGAACATGCACTTGATCCACAGTATGCCCGTAAACTGGG
TGTAGACATTGATAACCTGCTGGTTTCTCAGCCTGACAATGGTGAACAGGCGCTTGAAATTGCAGACATGCTGGTGCGCT
CTGGTGCGATTGACATGATTGTTGTCGACTCCGTAGCTGCATTGACACCACGTGCTGAAATCGAAGGTGAAATGGGCGAC
TCGCACATGGGCTTACAGGCTCGTTTAATGAGTCAGGCGCTGCGTAAAATCACCGGTAATGCTAAACGCTCAAACTGCAT
GGTGATCTTTATTAACCAGATCCGTATGAAAATCGGGGTCATGTTTGGCAGTCCTGAAACGACAACTGGTGGTAATGCAC
TGAAATTCTATGCTTCTGTACGCCTTGATATCCGCCGTGTCGGTCAGGTTAAAGAAGGTGATGAAATTGTAGGTTCTGAA
ACCAAAGTTAAAGTTGTTAAAAACAAAATGGCGCCTCCGTTCCGCGAAGCACTGTTCCAGATCCTGTACGGCAAAGGTGT
TAACCACTTAGGCGAACTGGTGGATTTGGCTGTGGCACAGGAACTGGTTCAAAAAGCGGGTGCATGGTATTCATATAAAG
GCGAAAAAATTGGTCAGGGTAAAAACAATGTGATCCGTCATCTTGAAGAAAACCCTCAGATTGTCCAGGAACTGGATAAA
GCAATCCGTGAACAGCTGCTGGTTACTGCAAATGCAGCACCTGCTGAAGAAAAAGACGAAGAAGAACCAGATTTCCTGGA
TGTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

90.23

100

0.902
  recA Acinetobacter baumannii D1279779

89.306

99.425

0.888
  recA Pseudomonas stutzeri DSM 10701

75

97.701

0.733
  recA Vibrio cholerae strain A1552

73.414

95.115

0.698
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.414

95.115

0.698
  recA Glaesserella parasuis strain SC1401

69.591

98.276

0.684
  recA Ralstonia pseudosolanacearum GMI1000

70.122

94.253

0.661
  recA Neisseria gonorrhoeae strain FA1090

69.136

93.103

0.644
  recA Neisseria gonorrhoeae MS11

69.136

93.103

0.644
  recA Neisseria gonorrhoeae MS11

69.136

93.103

0.644
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.391

98.563

0.615
  recA Streptococcus mutans UA159

59.483

100

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.538

95.115

0.595
  recA Streptococcus mitis SK321

60.411

97.989

0.592
  recA Streptococcus mitis NCTC 12261

60.411

97.989

0.592
  recA Streptococcus pneumoniae D39

59.884

98.851

0.592
  recA Streptococcus pneumoniae TIGR4

59.884

98.851

0.592
  recA Streptococcus pneumoniae R6

59.884

98.851

0.592
  recA Streptococcus pneumoniae Rx1

59.884

98.851

0.592
  recA Helicobacter pylori strain NCTC11637

59.767

98.563

0.589
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.006

94.54

0.586
  recA Helicobacter pylori 26695

59.475

98.563

0.586
  recA Streptococcus pyogenes NZ131

61.538

93.391

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

61.491

92.529

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

58.879

92.241

0.543
  recA Lactococcus lactis subsp. cremoris KW2

58.514

92.816

0.543