Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QSG84_RS01340 Genome accession   NZ_CP127893
Coordinates   308322..309365 (-) Length   347 a.a.
NCBI ID   WP_317031424.1    Uniprot ID   A0AA97EYR4
Organism   Acinetobacter sp. SAAs470     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 303322..314365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG84_RS01305 (QSG84_01305) - 303436..303924 (+) 489 WP_317031419.1 OmpH family outer membrane protein -
  QSG84_RS01310 (QSG84_01310) lpxD 303928..305004 (+) 1077 WP_317031420.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  QSG84_RS01315 (QSG84_01315) fabZ 305001..305480 (+) 480 WP_317031421.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QSG84_RS01320 (QSG84_01320) lpxA 305483..306271 (+) 789 WP_317031422.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  QSG84_RS01325 (QSG84_01325) - 306358..307224 (-) 867 WP_317032551.1 YbgF trimerization domain-containing protein -
  QSG84_RS01335 (QSG84_01335) - 307622..308251 (-) 630 WP_317031423.1 regulatory protein RecX -
  QSG84_RS01340 (QSG84_01340) recA 308322..309365 (-) 1044 WP_317031424.1 recombinase RecA Machinery gene
  QSG84_RS01345 (QSG84_01345) - 309511..309951 (-) 441 WP_317031425.1 RNA-binding S4 domain-containing protein -
  QSG84_RS01350 (QSG84_01350) - 309944..310618 (-) 675 WP_317031426.1 HAD-IA family hydrolase -
  QSG84_RS01355 (QSG84_01355) - 311166..311846 (-) 681 WP_317031427.1 hypothetical protein -
  QSG84_RS01360 (QSG84_01360) - 312067..312627 (-) 561 WP_317031428.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37719.24 Da        Isoelectric Point: 5.4897

>NTDB_id=845117 QSG84_RS01340 WP_317031424.1 308322..309365(-) (recA) [Acinetobacter sp. SAAs470]
MDENKSKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAISTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
ECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAVDLIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGQVKEGDEIIGSE
TKIKVVKNKMAPPFKEALFQILYGKGVNHLGEVIDLAVQQEIIQKAGAWYSYQGDKIGQGKNNTIRHLEEHPELARTIEK
LIRDKLLTTTTVPTTELDEETPEFLDA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=845117 QSG84_RS01340 WP_317031424.1 308322..309365(-) (recA) [Acinetobacter sp. SAAs470]
ATGGATGAAAATAAAAGTAAGGCACTAAATGCTGCATTAAGCCAAATTGAAAAACAGTTTGGTAAAAATACAGTGATGCG
TCTTGGAGATAACACCGTTCAAGCAGTTGAAGCAATTTCAACTGGCTCTTTGACGTTAGATATTGCATTGGGTATTGGTG
GTTTACCAAAAGGCCGTATTGTAGAAATCTATGGCCCTGAATCTTCGGGTAAAACAACCATGACATTACAAGCGATTGCT
GAATGTCAAAAAGCGGGCGGCACATGTGCATTTATTGATGCAGAACATGCTTTAGATCCTCAATATGCACGTAAATTAGG
CGTAGATATTGATAATCTTTTGGTTTCACAACCTGACCATGGTGAGCAAGCACTTGAAATTGCCGACATGCTGGTACGTT
CTGGTGCAGTCGATCTAATTGTTGTGGACTCTGTTGCTGCACTTACGCCTCGTGCTGAAATTGAAGGTGAAATGGGTGAC
TCTCATATGGGCTTACAAGCCCGCCTCATGAGTCAAGCACTACGAAAAATTACAGGAAATGCCAAACGCTCTAACTGCAT
GGTCATCTTCATTAACCAGATTCGTATGAAAATTGGTGTGATGTTTGGTAGCCCAGAAACCACCACGGGTGGTAATGCAT
TAAAATTCTATGCGTCTGTACGCCTAGATATTCGCAGAACAGGCCAAGTAAAAGAAGGTGATGAAATTATTGGTTCAGAA
ACCAAAATTAAAGTCGTTAAAAACAAAATGGCACCACCATTTAAAGAAGCATTATTCCAGATTCTTTATGGTAAAGGTGT
CAATCATCTAGGCGAAGTGATTGATCTTGCCGTACAACAAGAAATTATTCAAAAGGCAGGTGCTTGGTATTCATATCAAG
GTGATAAGATTGGTCAAGGTAAAAATAATACCATCCGCCATCTAGAAGAACATCCCGAACTTGCTCGAACCATCGAGAAA
CTGATTCGAGATAAATTACTGACGACAACTACTGTTCCAACCACAGAGTTAGATGAAGAAACACCTGAGTTTTTAGATGC
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

87.679

100

0.882
  recA Acinetobacter baumannii D1279779

87.572

99.712

0.873
  recA Pseudomonas stutzeri DSM 10701

76.061

95.101

0.723
  recA Vibrio cholerae strain A1552

74.695

94.524

0.706
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.695

94.524

0.706
  recA Glaesserella parasuis strain SC1401

70.642

94.236

0.666
  recA Ralstonia pseudosolanacearum GMI1000

70.122

94.524

0.663
  recA Neisseria gonorrhoeae MS11

67.593

93.372

0.631
  recA Neisseria gonorrhoeae MS11

67.593

93.372

0.631
  recA Neisseria gonorrhoeae strain FA1090

67.593

93.372

0.631
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.653

95.389

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.647

97.983

0.614
  recA Helicobacter pylori strain NCTC11637

63.609

94.236

0.599
  recA Streptococcus pneumoniae R6

60.997

98.271

0.599
  recA Streptococcus pneumoniae Rx1

60.997

98.271

0.599
  recA Streptococcus pneumoniae D39

60.997

98.271

0.599
  recA Streptococcus pneumoniae TIGR4

60.997

98.271

0.599
  recA Helicobacter pylori 26695

63.303

94.236

0.597
  recA Streptococcus mutans UA159

62.883

93.948

0.591
  recA Streptococcus pyogenes NZ131

62.195

94.524

0.588
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.656

93.948

0.579
  recA Streptococcus mitis NCTC 12261

61.92

93.084

0.576
  recA Streptococcus mitis SK321

61.92

93.084

0.576
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

92.507

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

57.602

98.559

0.568
  recA Lactococcus lactis subsp. cremoris KW2

59.752

93.084

0.556