Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QQS39_RS04860 Genome accession   NZ_CP127389
Coordinates   1059112..1060182 (+) Length   356 a.a.
NCBI ID   WP_099075159.1    Uniprot ID   -
Organism   Proteus appendicitidis strain HZ0627     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1054112..1065182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQS39_RS04840 (QQS39_04840) aroL 1054487..1054999 (+) 513 WP_285805486.1 shikimate kinase AroL -
  QQS39_RS04845 (QQS39_04845) aas 1055103..1057262 (+) 2160 WP_285805487.1 bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase -
  QQS39_RS04850 (QQS39_04850) lplT 1057262..1058461 (+) 1200 WP_285805488.1 lysophospholipid transporter LplT -
  QQS39_RS04855 (QQS39_04855) pncC 1058498..1059004 (+) 507 WP_151434504.1 nicotinamide-nucleotide amidase -
  QQS39_RS04860 (QQS39_04860) recA 1059112..1060182 (+) 1071 WP_099075159.1 recombinase RecA Machinery gene
  QQS39_RS04865 (QQS39_04865) alaS 1061087..1063714 (+) 2628 WP_285805489.1 alanine--tRNA ligase -
  QQS39_RS04870 (QQS39_04870) csrA 1063935..1064123 (+) 189 WP_004244778.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38359.63 Da        Isoelectric Point: 4.8874

>NTDB_id=843973 QQS39_RS04860 WP_099075159.1 1059112..1060182(+) (recA) [Proteus appendicitidis strain HZ0627]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMNVETISTGSLSLDVALGAGGLPRGRIVEIYGPESSGKTTLTLQV
IAAAQREGKICAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEI
GDSHVGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKNGDEVVG
SETRVKVVKNKIAAPFKQAEFQIMYGEGINTFGELIDLGVKHKLVEKAGAWYSYNGEKIGQGKANATTYLKEHPEMYDEL
NTKLREMLLNHAGEFTSAADFTNDSDNAADIEETEE

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=843973 QQS39_RS04860 WP_099075159.1 1059112..1060182(+) (recA) [Proteus appendicitidis strain HZ0627]
ATGGCTATTGATGAAAACAAACAAAAAGCATTGGCCGCAGCACTTGGTCAAATTGAAAAGCAATTTGGTAAAGGGTCTAT
CATGCGTCTGGGCGAAGATCGTTCCATGAACGTTGAAACCATCTCTACAGGTTCTTTATCATTAGACGTTGCTTTAGGTG
CTGGTGGTTTACCACGCGGTCGTATTGTTGAAATCTATGGCCCAGAATCTTCAGGTAAAACAACGTTAACACTACAAGTT
ATCGCAGCGGCTCAACGTGAAGGCAAAATTTGTGCATTTATCGATGCTGAGCACGCTTTAGATCCTATCTACGCTAAAAA
ACTAGGCGTAGATATTGATAATCTGCTGTGTTCTCAGCCTGATACAGGTGAACAAGCCTTAGAGATTTGTGATGCATTAT
CTCGTTCTGGTGCTGTTGATGTTATCGTTGTTGACTCCGTTGCTGCCTTAACACCAAAAGCAGAAATTGAAGGTGAAATT
GGTGATTCACACGTTGGCTTAGCCGCTCGTATGATGAGCCAAGCTATGCGTAAATTAGCGGGTAACCTGAAAAACTCCAA
CACATTGCTTATTTTCATCAACCAAATTCGTATGAAAATCGGTGTTATGTTTGGTAACCCAGAAACAACAACAGGTGGTA
ATGCACTTAAATTCTACGCATCTGTTCGTTTAGATATTCGTCGTATCGGTTCTGTTAAAAACGGTGATGAAGTTGTTGGT
AGTGAAACTCGCGTTAAAGTGGTGAAAAACAAGATTGCAGCACCATTTAAACAAGCTGAATTCCAAATTATGTATGGCGA
AGGTATTAATACCTTTGGTGAACTAATTGATTTAGGTGTTAAACATAAATTGGTAGAGAAAGCTGGCGCATGGTACAGCT
ACAATGGTGAGAAAATTGGTCAAGGTAAAGCCAATGCAACAACTTACCTGAAAGAACACCCTGAAATGTATGATGAGCTA
AACACTAAACTACGTGAAATGTTATTAAATCATGCGGGCGAATTTACTAGTGCAGCCGATTTTACTAACGATAGTGATAA
TGCTGCAGACATTGAAGAGACAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

82.216

96.348

0.792
  recA Vibrio cholerae O1 biovar El Tor strain E7946

82.216

96.348

0.792
  recA Pseudomonas stutzeri DSM 10701

75.229

91.854

0.691
  recA Acinetobacter baumannii D1279779

68.644

99.438

0.683
  recA Acinetobacter baylyi ADP1

70.76

96.067

0.68
  recA Glaesserella parasuis strain SC1401

67.33

98.876

0.666
  recA Neisseria gonorrhoeae MS11

69.325

91.573

0.635
  recA Neisseria gonorrhoeae MS11

69.325

91.573

0.635
  recA Neisseria gonorrhoeae strain FA1090

69.325

91.573

0.635
  recA Ralstonia pseudosolanacearum GMI1000

68.902

92.135

0.635
  recA Streptococcus pneumoniae R6

61.919

96.629

0.598
  recA Streptococcus pneumoniae Rx1

61.919

96.629

0.598
  recA Streptococcus pneumoniae D39

61.919

96.629

0.598
  recA Streptococcus pneumoniae TIGR4

61.919

96.629

0.598
  recA Helicobacter pylori 26695

63.609

91.854

0.584
  recA Helicobacter pylori strain NCTC11637

63.303

91.854

0.581
  recA Lactococcus lactis subsp. cremoris KW2

63.385

91.292

0.579
  recA Streptococcus mitis NCTC 12261

63.467

90.73

0.576
  recA Streptococcus mitis SK321

63.158

90.73

0.573
  recA Streptococcus pyogenes NZ131

62.769

91.292

0.573
  recA Bacillus subtilis subsp. subtilis str. 168

63.551

90.169

0.573
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.654

91.011

0.57
  recA Latilactobacillus sakei subsp. sakei 23K

62.154

91.292

0.567
  recA Streptococcus mutans UA159

61.538

91.292

0.562
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.912

92.978

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.813

90.169

0.539