Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DBT50_RS03095 Genome accession   NZ_CP127382
Coordinates   681948..683063 (+) Length   371 a.a.
NCBI ID   WP_013669682.1    Uniprot ID   F2I5Q4
Organism   Aerococcus tenax strain UMB3669     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 676948..688063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBT50_RS03075 (DBT50_009210) - 676965..677243 (-) 279 WP_111821203.1 acylphosphatase -
  DBT50_RS03080 (DBT50_009215) - 677398..679752 (+) 2355 WP_111851695.1 DNA translocase FtsK -
  DBT50_RS03085 (DBT50_009220) pgsA 679998..680576 (+) 579 WP_111851694.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DBT50_RS03090 (DBT50_009225) - 680628..681866 (+) 1239 WP_111851693.1 competence/damage-inducible protein A -
  DBT50_RS03095 (DBT50_009230) recA 681948..683063 (+) 1116 WP_013669682.1 recombinase RecA Machinery gene
  DBT50_RS03100 (DBT50_009235) rny 683348..684919 (+) 1572 WP_064292335.1 ribonuclease Y -
  DBT50_RS03105 (DBT50_009240) - 685574..686731 (-) 1158 WP_111851692.1 site-specific integrase -
  DBT50_RS03110 (DBT50_009250) - 686846..687313 (-) 468 WP_111851691.1 helix-turn-helix domain-containing protein -
  DBT50_RS03115 (DBT50_009255) - 687451..687657 (+) 207 WP_111851690.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40078.80 Da        Isoelectric Point: 4.3539

>NTDB_id=843880 DBT50_RS03095 WP_013669682.1 681948..683063(+) (recA) [Aerococcus tenax strain UMB3669]
MSTSHDANRQKALDQALKQIEKNFGKGAIMKMGESTDTQVSTVPSGSLSLDIALGVGGYPRGRIIEVYGPESSGKTTVAL
HAVAEVQKQGGIAAFIDAENALDPEYARALGVDIDELLLSQPDTGEQGLEIADALVSSGAIDIVVVDSVAALVPRAEIEG
EMGDSHVGLQARLMSQALRKLSGSINKTKTIAMFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRGERIKSGQDI
IGNRTKIKVVKNKVAPPFKVAEVDIMYGQGISQAGELVDLAADMDIIKKSGSWYSYGDDRIGQGRENAKLYLTENPDIFK
EIDSKVRAEYGFGPAVEDDDSEDETTNEEAKNDSSSDEENETLDLFNDDEE

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=843880 DBT50_RS03095 WP_013669682.1 681948..683063(+) (recA) [Aerococcus tenax strain UMB3669]
ATGAGTACATCACATGATGCAAACCGCCAAAAGGCTTTAGACCAGGCCCTTAAACAAATTGAAAAAAACTTTGGTAAGGG
AGCTATAATGAAGATGGGAGAATCAACGGATACTCAGGTGTCGACTGTTCCGTCAGGCTCCTTATCCTTAGATATTGCCC
TAGGAGTCGGAGGTTATCCGCGTGGACGAATTATTGAAGTCTACGGTCCAGAATCTTCTGGGAAAACCACTGTTGCCCTA
CATGCTGTTGCCGAGGTTCAAAAACAAGGTGGAATTGCTGCCTTTATTGATGCTGAGAACGCCTTAGACCCTGAATACGC
TAGAGCTTTGGGGGTTGACATTGATGAGCTATTACTCTCCCAACCGGATACTGGTGAACAAGGGTTAGAAATTGCTGATG
CCTTAGTGTCCTCTGGTGCGATTGATATTGTCGTTGTCGATTCTGTTGCTGCCTTAGTTCCACGGGCTGAAATTGAAGGT
GAGATGGGGGACTCCCATGTGGGGCTCCAAGCTCGCTTGATGTCTCAAGCCCTACGGAAGTTATCGGGCTCCATTAATAA
GACGAAAACCATTGCCATGTTTATTAACCAGATTCGTGAAAAAGTAGGTGTCATGTTTGGGAACCCAGAAACCACCCCAG
GGGGAAGGGCCCTAAAATTTTATTCCACTATTCGTCTAGAAGTTAGACGCGGGGAACGGATCAAATCCGGTCAGGATATT
ATTGGTAACCGCACTAAGATTAAAGTTGTAAAAAATAAGGTAGCTCCGCCATTTAAGGTTGCTGAAGTGGATATTATGTA
TGGGCAAGGAATTTCTCAAGCGGGTGAATTAGTTGATTTAGCTGCTGACATGGATATCATTAAGAAGAGTGGCTCTTGGT
ATTCTTACGGGGATGACCGGATTGGCCAAGGACGCGAGAATGCCAAACTATATCTCACCGAAAACCCTGACATATTTAAG
GAAATTGATAGTAAGGTTCGAGCAGAGTATGGTTTTGGTCCAGCTGTTGAAGATGACGATTCAGAGGATGAAACCACCAA
TGAAGAAGCCAAAAACGATTCATCAAGTGATGAAGAAAATGAAACCCTAGATTTATTTAACGATGATGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(11-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F2I5Q4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

80.645

91.914

0.741
  recA Bacillus subtilis subsp. subtilis str. 168

77.914

87.871

0.685
  recA Streptococcus pneumoniae D39

68.785

97.574

0.671
  recA Streptococcus pneumoniae R6

68.785

97.574

0.671
  recA Streptococcus pneumoniae TIGR4

68.785

97.574

0.671
  recA Streptococcus pneumoniae Rx1

68.785

97.574

0.671
  recA Streptococcus mitis NCTC 12261

67.209

99.461

0.668
  recA Streptococcus mitis SK321

66.938

99.461

0.666
  recA Streptococcus mutans UA159

67.867

97.305

0.66
  recA Streptococcus pyogenes NZ131

72.783

88.14

0.642
  recA Lactococcus lactis subsp. cremoris KW2

68.497

93.261

0.639
  recA Neisseria gonorrhoeae strain FA1090

63.45

92.183

0.585
  recA Neisseria gonorrhoeae MS11

63.45

92.183

0.585
  recA Neisseria gonorrhoeae MS11

63.45

92.183

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.848

88.949

0.577
  recA Acinetobacter baylyi ADP1

60.933

92.453

0.563
  recA Acinetobacter baumannii D1279779

61.29

91.914

0.563
  recA Glaesserella parasuis strain SC1401

58.841

92.992

0.547
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.661

89.757

0.544
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.733

86.792

0.544
  recA Vibrio cholerae strain A1552

62.733

86.792

0.544
  recA Ralstonia pseudosolanacearum GMI1000

62.857

84.906

0.534
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.31

92.183

0.528
  recA Pseudomonas stutzeri DSM 10701

59.259

87.332

0.518
  recA Helicobacter pylori strain NCTC11637

58.41

88.14

0.515
  recA Helicobacter pylori 26695

58.41

88.14

0.515