Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   QRA07_RS08585 Genome accession   NZ_CP127321
Coordinates   1828152..1829198 (-) Length   348 a.a.
NCBI ID   WP_233735280.1    Uniprot ID   -
Organism   Acinetobacter pittii strain PC870     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1823152..1834198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA07_RS08550 (QRA07_08575) ompH 1823400..1823900 (+) 501 WP_016145644.1 OmpH family outer membrane protein -
  QRA07_RS08555 (QRA07_08580) lpxD 1823905..1824975 (+) 1071 WP_032003815.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  QRA07_RS08560 (QRA07_08585) fabZ 1824982..1825467 (+) 486 WP_002115603.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QRA07_RS08565 (QRA07_08590) lpxA 1825464..1826252 (+) 789 WP_017385998.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  QRA07_RS08570 (QRA07_08595) - 1826310..1827185 (-) 876 WP_126645395.1 YbgF trimerization domain-containing protein -
  QRA07_RS08580 (QRA07_08605) recX 1827610..1828092 (-) 483 WP_005068912.1 regulatory protein RecX -
  QRA07_RS08585 (QRA07_08610) recA 1828152..1829198 (-) 1047 WP_233735280.1 recombinase RecA Machinery gene
  QRA07_RS08590 (QRA07_08615) hslR 1829344..1829772 (-) 429 WP_005068915.1 RNA-binding S4 domain-containing protein -
  QRA07_RS08595 (QRA07_08620) yrfG 1829756..1830442 (-) 687 WP_233735281.1 HAD-IA family hydrolase -
  QRA07_RS08600 (QRA07_08625) - 1830867..1831160 (+) 294 WP_025465974.1 hypothetical protein -
  QRA07_RS08605 (QRA07_08630) - 1831198..1831734 (-) 537 WP_233735282.1 GNAT family N-acetyltransferase -
  QRA07_RS08610 (QRA07_08635) gigD 1831764..1832213 (-) 450 WP_017386002.1 Lrp/AsnC family transcriptional regulator GigD -
  QRA07_RS08615 (QRA07_08640) kynU 1832361..1833611 (+) 1251 WP_161282307.1 kynureninase -

Sequence


Protein


Download         Length: 348 a.a.        Molecular weight: 37691.16 Da        Isoelectric Point: 4.9278

>NTDB_id=843409 QRA07_RS08585 WP_233735280.1 1828152..1829198(-) (recA) [Acinetobacter pittii strain PC870]
MDENKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
QCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIIGSE
TRVKVVKNKMAPPFKEAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRHFEENPQMAGEIEK
IIREQLLTTGINGAVQVEDEEEDLLLES

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=843409 QRA07_RS08585 WP_233735280.1 1828152..1829198(-) (recA) [Acinetobacter pittii strain PC870]
ATGGATGAGAATAAAAGCAAAGCATTACAAGCCGCGCTAAGTCAAATTGAGAAACAATTTGGCAAAAATACGGTGATGCG
TCTCGGTGACAACACTGTTCAAGCAGTTGAAGCTGTATCTACAGGTTCTTTGACGTTAGATATTGCATTGGGGATTGGCG
GTTTACCGAAAGGTCGTATCGTTGAGATTTATGGTCCAGAATCTTCTGGTAAAACCACAATGACTCTCCAAGCGATTGCA
CAATGTCAAAAAGCTGGTGGTACCTGTGCATTTATCGATGCAGAACACGCATTAGATCCACAATATGCACGTAAGCTGGG
CGTTGACATTGATAATCTACTTGTATCGCAACCAGATAACGGTGAACAAGCACTCGAGATTGCAGACATGCTAGTTCGCT
CTGGTGCAATTGATTTAATCGTTGTCGACTCAGTTGCTGCTCTTACTCCTAAAGCAGAAATTGAAGGCGAAATGGGTGAC
TCTCACATGGGCTTACAAGCTCGCCTAATGAGTCAGGCATTACGTAAAATTACGGGTAACGCTAAACGCTCGAACTGTAT
GGTTATTTTCATTAACCAGATCCGTATGAAAATTGGTGTAATGTTTGGTAGTCCTGAGACTACGACTGGTGGTAACGCAT
TGAAGTTCTATGCTTCTGTACGTTTAGATATCCGCCGTATTGGTCAAGTCAAAGAAGGTGATGAAATCATCGGCTCTGAA
ACTCGAGTTAAAGTTGTTAAAAACAAAATGGCTCCTCCATTTAAAGAAGCTATTTTCCAAATCTTGTACGGTAAAGGTAC
AAACCAGCTTGGCGAACTTGTAGATTTAGCTGTACAACAAGATATCGTGCAAAAAGCAGGTGCTTGGTATTCATATCAAG
GTAATAAAATTGGTCAGGGTAAAAACAACGTTATTCGCCACTTTGAAGAAAATCCTCAAATGGCTGGAGAAATTGAAAAG
ATTATCCGTGAACAACTTCTAACTACGGGTATTAATGGTGCTGTACAAGTGGAAGATGAAGAAGAAGATCTTTTATTAGA
GTCTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

96.275

100

0.966

  recA Acinetobacter baylyi ADP1

92.837

100

0.931

  recA Pseudomonas stutzeri DSM 10701

75.602

95.402

0.721

  recA Vibrio cholerae strain A1552

74.006

93.966

0.695

  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.006

93.966

0.695

  recA Glaesserella parasuis strain SC1401

71.914

93.103

0.67

  recA Ralstonia pseudosolanacearum GMI1000

69.817

94.253

0.658

  recA Neisseria gonorrhoeae MS11

68.827

93.103

0.641

  recA Neisseria gonorrhoeae MS11

68.827

93.103

0.641

  recA Neisseria gonorrhoeae strain FA1090

68.827

93.103

0.641

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.391

98.563

0.615

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.048

95.115

0.609

  recA Helicobacter pylori strain NCTC11637

63.914

93.966

0.601

  recA Helicobacter pylori 26695

63.609

93.966

0.598

  recA Streptococcus mitis SK321

59.531

97.989

0.583

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.038

91.092

0.583

  recA Streptococcus mutans UA159

61.89

94.253

0.583

  recA Streptococcus pyogenes NZ131

61.538

93.391

0.575

  recA Streptococcus pneumoniae D39

61.043

93.678

0.572

  recA Streptococcus pneumoniae Rx1

61.043

93.678

0.572

  recA Streptococcus pneumoniae R6

61.043

93.678

0.572

  recA Streptococcus pneumoniae TIGR4

61.043

93.678

0.572

  recA Bacillus subtilis subsp. subtilis str. 168

61.491

92.529

0.569

  recA Streptococcus mitis NCTC 12261

60.736

93.678

0.569

  recA Lactococcus lactis subsp. cremoris KW2

58.824

92.816

0.546

  recA Latilactobacillus sakei subsp. sakei 23K

59.19

92.241

0.546