Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QO259_RS14085 Genome accession   NZ_CP127244
Coordinates   3082256..3083326 (-) Length   356 a.a.
NCBI ID   WP_285950428.1    Uniprot ID   A0A9Y2D8F2
Organism   Salinicola sp. JS01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3077256..3088326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QO259_RS14075 (QO259_14075) alaS 3078561..3081164 (-) 2604 WP_207033024.1 alanine--tRNA ligase -
  QO259_RS14080 (QO259_14080) - 3081727..3082182 (-) 456 WP_285950427.1 regulatory protein RecX -
  QO259_RS14085 (QO259_14085) recA 3082256..3083326 (-) 1071 WP_285950428.1 recombinase RecA Machinery gene
  QO259_RS14090 (QO259_14090) - 3083595..3084122 (-) 528 WP_285950429.1 nicotinamide-nucleotide amidohydrolase family protein -
  QO259_RS14095 (QO259_14095) - 3084290..3084475 (-) 186 WP_285950430.1 hypothetical protein -
  QO259_RS14100 (QO259_14100) mutS 3084734..3087316 (+) 2583 WP_285950431.1 DNA mismatch repair protein MutS -
  QO259_RS14105 (QO259_14105) fdxA 3087604..3087927 (+) 324 WP_285950432.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38102.46 Da        Isoelectric Point: 5.1422

>NTDB_id=843040 QO259_RS14085 WP_285950428.1 3082256..3083326(-) (recA) [Salinicola sp. JS01]
MAQDENRSKALSAALSQIDRQFGKGTVMRLGDTPRTAIPVVSTGSLGLDIALGVGGLPYGRVVEIFGPESSGKTTLTLSV
IAQAQKQGKTCAFIDAEHALDPSYAEKLGVDLDQLLVSQPDTGEQALEICDMLVRSGGVDVIIIDSVAALTPRAEIEGEM
GDSHVGLQARLMSQALRKITGNIKNANCMVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKQGDEVTG
NETRVKVVKNKVAPPFRQSEFQILYGKGIYHAGEVIDLGVQCSLVDKAGAWYSYKGSKIGQGKANAAQYLEENPAIMTEI
EDQIRAQLLAVAAPKEKDKEKETEAAATDDANDSLL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=843040 QO259_RS14085 WP_285950428.1 3082256..3083326(-) (recA) [Salinicola sp. JS01]
ATGGCACAGGACGAAAATCGCAGCAAGGCACTCAGCGCGGCTTTGTCGCAGATCGACCGCCAATTCGGCAAAGGCACCGT
GATGCGTCTGGGCGATACGCCGCGCACCGCCATCCCGGTGGTCTCGACCGGCTCGCTGGGGTTGGATATCGCCCTTGGGG
TGGGCGGTCTGCCCTACGGCCGCGTGGTCGAGATCTTCGGCCCTGAATCCTCGGGCAAGACCACCCTGACCCTGTCGGTG
ATCGCCCAGGCGCAGAAGCAGGGCAAGACCTGCGCCTTCATCGACGCCGAGCACGCGCTCGATCCGAGCTACGCCGAGAA
GCTGGGGGTCGACCTCGACCAGCTGCTGGTGTCGCAGCCGGACACCGGCGAGCAGGCGCTGGAGATCTGCGACATGCTGG
TGCGCTCCGGCGGTGTCGACGTCATCATCATCGACTCGGTGGCGGCGCTCACCCCGCGCGCCGAGATCGAGGGCGAGATG
GGCGACTCCCACGTCGGCCTGCAGGCACGTTTGATGTCGCAGGCACTGCGCAAGATCACCGGCAACATCAAGAACGCCAA
CTGCATGGTGGTGTTCATCAACCAGATCCGCATGAAGATCGGGGTGATGTTCGGCAGCCCCGAGACCACCACCGGCGGTA
ACGCGCTGAAGTTCTACTCCAGCGTGCGTCTCGACATTCGCCGCATCGGCTCGGTCAAGCAGGGTGACGAGGTCACCGGT
AACGAGACCCGGGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCGTTCCGCCAGTCCGAGTTCCAGATTCTCTACGGCAA
GGGCATCTACCATGCCGGCGAGGTGATCGACCTGGGCGTGCAGTGCAGCCTGGTCGACAAGGCCGGTGCCTGGTACAGCT
ACAAGGGCAGCAAGATCGGCCAGGGCAAGGCCAATGCGGCCCAGTACCTGGAAGAGAATCCGGCGATCATGACCGAGATC
GAGGATCAGATTCGCGCCCAGCTGCTGGCCGTTGCCGCGCCCAAGGAGAAGGACAAGGAGAAGGAAACGGAAGCCGCGGC
CACCGACGACGCCAACGACTCGCTGCTGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

81.515

92.697

0.756
  recA Acinetobacter baylyi ADP1

76.667

92.697

0.711
  recA Acinetobacter baumannii D1279779

76.074

91.573

0.697
  recA Vibrio cholerae strain A1552

69.364

97.191

0.674
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.364

97.191

0.674
  recA Glaesserella parasuis strain SC1401

71.605

91.011

0.652
  recA Neisseria gonorrhoeae MS11

71.207

90.73

0.646
  recA Neisseria gonorrhoeae MS11

71.207

90.73

0.646
  recA Neisseria gonorrhoeae strain FA1090

71.207

90.73

0.646
  recA Ralstonia pseudosolanacearum GMI1000

72.026

87.36

0.629
  recA Helicobacter pylori 26695

62.918

92.416

0.581
  recA Helicobacter pylori strain NCTC11637

62.614

92.416

0.579
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.577

91.573

0.573
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.661

93.539

0.567
  recA Bacillus subtilis subsp. subtilis str. 168

62.813

89.888

0.565
  recA Streptococcus mutans UA159

55.65

99.438

0.553
  recA Streptococcus mitis NCTC 12261

55.807

99.157

0.553
  recA Latilactobacillus sakei subsp. sakei 23K

58.036

94.382

0.548
  recA Streptococcus mitis SK321

55.241

99.157

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.41

91.854

0.537
  recA Streptococcus pneumoniae Rx1

57.669

91.573

0.528
  recA Streptococcus pneumoniae D39

57.669

91.573

0.528
  recA Streptococcus pneumoniae R6

57.669

91.573

0.528
  recA Streptococcus pneumoniae TIGR4

57.669

91.573

0.528
  recA Streptococcus pyogenes NZ131

56.707

92.135

0.522
  recA Lactococcus lactis subsp. cremoris KW2

56.442

91.573

0.517